Variant report

Variant	rs12670106
Chromosome Location	chr7:146848333-146848334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10085697	0.94[JPT][hapmap]
rs1018073	1.00[JPT][hapmap]
rs1018074	0.94[JPT][hapmap]
rs10240438	0.94[JPT][hapmap]
rs10255525	0.89[JPT][hapmap]
rs10261858	0.89[JPT][hapmap]
rs10263495	0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10266913	0.89[JPT][hapmap]
rs10268252	0.94[JPT][hapmap]
rs10273775	0.89[JPT][hapmap]
rs10274224	0.89[JPT][hapmap]
rs10276955	0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs10278454	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10500171	0.89[JPT][hapmap]
rs10952672	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10952673	0.81[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs10952674	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs12532448	0.89[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12666338	0.81[CEU][hapmap];0.94[JPT][hapmap]
rs12671954	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1390717	0.94[JPT][hapmap]
rs1390718	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1496536	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs1496537	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs1496541	0.89[JPT][hapmap]
rs1496542	0.89[JPT][hapmap]
rs1826843	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1908765	0.89[JPT][hapmap]
rs3807570	0.89[JPT][hapmap]
rs4146047	0.89[JPT][hapmap]
rs4512308	0.94[JPT][hapmap]
rs4559158	0.80[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4725704	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs4725706	0.87[ASN][1000 genomes]
rs4726818	0.89[JPT][hapmap]
rs4726821	0.83[ASN][1000 genomes]
rs4726822	0.84[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs62481835	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6959187	0.80[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6961500	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs6965650	0.94[JPT][hapmap]
rs7385969	0.89[JPT][hapmap]
rs7789511	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs7791332	0.84[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7792380	0.84[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7795067	0.94[JPT][hapmap]
rs7799140	0.89[JPT][hapmap]
rs7801686	0.94[JPT][hapmap]
rs7805359	0.83[JPT][hapmap]
rs7806761	0.89[JPT][hapmap]
rs7807716	0.89[JPT][hapmap]
rs903898	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs903899	0.84[ASN][1000 genomes]
rs903900	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs924147	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9640235	0.86[CEU][hapmap];0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9640492	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs987419	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034510	chr7:146719973-146848581	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146846400-146850600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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