Variant report

Variant	rs3807570
Chromosome Location	chr7:146826061-146826062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10085697	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs1018073	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1018074	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs10240438	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs10255525	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10261858	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10263495	0.94[JPT][hapmap]
rs10266913	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs10268252	1.00[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap]
rs10273775	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10274224	0.88[JPT][hapmap]
rs10276955	0.94[ASW][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10278454	0.94[JPT][hapmap]
rs10500171	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10952672	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10952673	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10952674	0.90[JPT][hapmap]
rs12532448	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12666338	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs12670106	0.89[JPT][hapmap]
rs12671954	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1390717	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1390718	0.83[ASW][hapmap];0.94[JPT][hapmap]
rs1496536	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1496537	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1496541	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1496542	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1826843	0.94[JPT][hapmap];0.81[MEX][hapmap]
rs1908765	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2191271	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs4146047	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4512308	0.94[JPT][hapmap]
rs4559158	0.90[JPT][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap]
rs4725704	0.91[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap]
rs4726818	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4726822	0.94[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs6959187	0.94[ASW][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6961500	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6965650	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs6968536	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs7385969	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7789511	0.94[JPT][hapmap]
rs7791332	0.94[JPT][hapmap]
rs7792380	0.81[ASW][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.88[YRI][hapmap]
rs7795067	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs7799140	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7801686	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7802451	0.83[ASN][1000 genomes]
rs7805359	0.91[CHB][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs7806761	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7807716	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap]
rs7811513	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs903898	0.94[JPT][hapmap]
rs903900	0.91[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap]
rs924147	1.00[JPT][hapmap]
rs9640492	0.90[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes]
rs987419	0.91[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034510	chr7:146719973-146848581	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv933332	chr7:146805138-146826061	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3807570	OR2A5	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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