Variant report

Variant	rs1390717
Chromosome Location	chr7:146859456-146859457
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10085697	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1018073	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs1018074	0.93[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs10240438	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs10255525	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs10261858	0.96[CHB][hapmap];0.90[JPT][hapmap]
rs10263495	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10266913	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10268252	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10273775	0.81[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs10274224	0.82[CHB][hapmap]
rs10276955	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10278454	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10279761	0.83[EUR][1000 genomes]
rs10500171	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes]
rs10952673	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs10952674	0.95[JPT][hapmap]
rs11768562	0.82[CEU][hapmap]
rs12532448	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12666338	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs12670106	0.94[JPT][hapmap]
rs12671954	0.95[JPT][hapmap]
rs1390718	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1390720	0.81[CEU][hapmap]
rs1390722	0.81[CEU][hapmap]
rs1496536	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1496537	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1496540	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1496541	0.93[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap]
rs1496542	0.88[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap]
rs1496543	1.00[CEU][hapmap]
rs1826843	0.89[JPT][hapmap]
rs1908765	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2132593	0.82[CEU][hapmap]
rs2191271	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs2888441	0.83[EUR][1000 genomes]
rs3807570	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs3953445	0.80[EUR][1000 genomes]
rs4146047	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4512308	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs4559158	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs4725704	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4726818	0.84[JPT][hapmap]
rs4726821	0.96[EUR][1000 genomes]
rs4726822	1.00[JPT][hapmap]
rs6959187	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs6961500	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6965650	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs6968536	0.91[CHB][hapmap]
rs6968736	0.82[CEU][hapmap]
rs6974986	0.81[EUR][1000 genomes]
rs7385969	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs7783508	0.85[EUR][1000 genomes]
rs7789511	0.90[JPT][hapmap]
rs7790730	1.00[CEU][hapmap]
rs7791332	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7792380	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7795067	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7799140	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7801686	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs7802451	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7805359	0.96[CHB][hapmap];0.89[JPT][hapmap]
rs7806761	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7807716	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7811513	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs903898	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs903899	0.96[EUR][1000 genomes]
rs903900	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs924147	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9640492	0.95[JPT][hapmap]
rs9640495	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs987419	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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