Variant report

Variant	rs9640495
Chromosome Location	chr7:146885878-146885879
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10085697	0.86[ASN][1000 genomes]
rs10085840	0.84[AMR][1000 genomes]
rs1018073	0.88[ASN][1000 genomes]
rs1018074	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10263495	0.93[EUR][1000 genomes]
rs10273775	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10274224	0.86[ASN][1000 genomes]
rs10274399	0.88[ASN][1000 genomes]
rs10278454	0.90[EUR][1000 genomes]
rs10279761	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10500171	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12703883	0.88[ASN][1000 genomes]
rs1496540	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2888441	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4146047	0.93[EUR][1000 genomes]
rs4512308	0.93[ASN][1000 genomes]
rs4559158	0.90[ASN][1000 genomes]
rs4726821	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6954110	0.86[ASN][1000 genomes]
rs6974986	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7783508	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7795067	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7799140	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7802451	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7805359	0.90[ASN][1000 genomes]
rs7807716	0.93[ASN][1000 genomes]
rs903899	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs924147	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146885200-146886000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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