Variant report
| Variant | rs903899 |
|---|---|
| Chromosome Location | chr7:146837650-146837651 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1018074 | 0.83[EUR][1000 genomes] |
| rs10263495 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10273775 | 0.84[EUR][1000 genomes] |
| rs10278454 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10279761 | 0.83[EUR][1000 genomes] |
| rs10500171 | 0.91[EUR][1000 genomes] |
| rs10952672 | 0.95[ASN][1000 genomes] |
| rs12532448 | 0.95[ASN][1000 genomes] |
| rs12670106 | 0.84[ASN][1000 genomes] |
| rs12671954 | 0.90[ASN][1000 genomes] |
| rs1496540 | 0.83[EUR][1000 genomes] |
| rs2888441 | 0.83[EUR][1000 genomes] |
| rs3953445 | 0.80[EUR][1000 genomes] |
| rs4146047 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4726821 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62481835 | 0.86[ASN][1000 genomes] |
| rs6959187 | 0.96[ASN][1000 genomes] |
| rs6974986 | 0.81[EUR][1000 genomes] |
| rs7783508 | 0.85[EUR][1000 genomes] |
| rs7795067 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7799140 | 0.96[EUR][1000 genomes] |
| rs7802451 | 0.94[EUR][1000 genomes] |
| rs924147 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9640235 | 0.87[ASN][1000 genomes] |
| rs9640492 | 0.86[ASN][1000 genomes] |
| rs9640495 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034510 | chr7:146719973-146848581 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv933033 | chr7:146720301-147081560 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033898 | chr7:146721499-147081768 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:146837200-146838000 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr7:146837600-146841400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
