Variant report
| Variant | rs1496540 |
|---|---|
| Chromosome Location | chr7:146904391-146904392 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10085697 | 0.87[ASN][1000 genomes] |
| rs1018073 | 0.88[ASN][1000 genomes] |
| rs1018074 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10263495 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10273775 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10274224 | 0.87[ASN][1000 genomes] |
| rs10274399 | 0.88[ASN][1000 genomes] |
| rs10278454 | 0.81[EUR][1000 genomes] |
| rs10279761 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10500171 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12703883 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2888441 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4146047 | 0.83[EUR][1000 genomes] |
| rs4512308 | 0.88[ASN][1000 genomes] |
| rs4559158 | 0.86[ASN][1000 genomes] |
| rs4726821 | 0.85[EUR][1000 genomes] |
| rs6954110 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6974986 | 0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7783508 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7795067 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7799140 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7802451 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7805359 | 0.96[ASN][1000 genomes] |
| rs7807716 | 0.93[ASN][1000 genomes] |
| rs903899 | 0.83[EUR][1000 genomes] |
| rs924147 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9640495 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933033 | chr7:146720301-147081560 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033898 | chr7:146721499-147081768 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv889395 | chr7:146848251-146969389 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv889396 | chr7:146854133-147035067 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:146904200-146905000 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 2 | chr7:146904200-146905200 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
