Variant report

Variant	rs10957156
Chromosome Location	chr8:61629401-61629402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61626795..61628526-chr8:61628668..61632012,3	MCF-7	breast:
2	chr8:61591174..61593947-chr8:61626496..61632032,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10093135	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10103011	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10109193	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1038351	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1038352	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10448027	0.88[EUR][1000 genomes]
rs10808711	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808712	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10808713	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957154	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957155	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957158	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957161	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11985638	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11986742	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11988338	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11990117	0.86[ASN][1000 genomes]
rs11990495	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11991467	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11992809	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11993480	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11993490	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11993896	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11995234	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997122	0.86[ASN][1000 genomes]
rs12544305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12681737	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13255519	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13264014	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13269752	0.81[EUR][1000 genomes]
rs13277976	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1384688	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1483206	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16926407	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1905305	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1964573	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2035456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2035457	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2054666	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2054667	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2128713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2326598	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28653462	0.87[ASN][1000 genomes]
rs2875984	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4237037	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4237038	0.81[EUR][1000 genomes]
rs4289855	0.88[EUR][1000 genomes]
rs4301480	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4307377	0.89[CHB][hapmap]
rs4391471	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4392940	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4449834	0.90[CHB][hapmap]
rs4500113	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4526395	1.00[CHB][hapmap]
rs4540437	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4562360	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4581092	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4737563	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4737565	0.85[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs4738815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4738818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4738820	0.90[EUR][1000 genomes]
rs4738821	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4738822	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4738824	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4738827	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4738831	0.90[CHB][hapmap]
rs4738832	0.90[CHB][hapmap]
rs6471894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471897	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6471898	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6471901	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471902	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471903	0.94[CEU][hapmap];0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs6471905	0.90[CHB][hapmap]
rs6982898	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6988582	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6994180	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6995557	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6996597	0.84[EUR][1000 genomes]
rs6996775	0.80[EUR][1000 genomes]
rs6997208	0.84[EUR][1000 genomes]
rs7000766	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7000957	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002806	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7005873	0.89[CHB][hapmap]
rs7009754	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7011972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012450	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017676	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs730085	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7814114	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7816126	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7816621	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7823484	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7826035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834076	0.85[EUR][1000 genomes]
rs7834977	0.88[CHB][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7836586	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7838426	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7840098	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7842389	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7842498	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7843033	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7845701	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7846065	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs900502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9298040	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9298042	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9643371	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9650201	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv6219	chr8:61599770-61644558	Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61615600-61644400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:61621200-61646400	Weak transcription	Fetal Brain Male	brain
3	chr8:61621400-61632200	Weak transcription	HepG2	liver
4	chr8:61621600-61634200	Weak transcription	Primary T cells from cord blood	blood
5	chr8:61621600-61636400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:61621800-61638200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:61622200-61631400	Weak transcription	Primary B cells from cord blood	blood
8	chr8:61623200-61635800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:61623400-61632400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:61623400-61633000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:61626600-61636000	Weak transcription	Fetal Lung	lung
12	chr8:61627000-61632200	Weak transcription	Brain Germinal Matrix	brain
13	chr8:61627200-61633800	Weak transcription	Lung	lung
14	chr8:61627400-61631400	Weak transcription	Gastric	stomach
15	chr8:61627400-61631600	Weak transcription	Right Ventricle	heart
16	chr8:61627400-61633000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:61627400-61636000	Weak transcription	Spleen	Spleen
18	chr8:61627600-61631200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:61627600-61631400	Weak transcription	Pancreas	Pancrea
20	chr8:61627600-61633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:61627600-61633000	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:61627600-61633400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:61627600-61634800	Weak transcription	Fetal Intestine Large	intestine
24	chr8:61627600-61636600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:61627600-61637200	Weak transcription	HMEC	breast
26	chr8:61627800-61630400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:61627800-61633800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:61627800-61634400	Weak transcription	Fetal Intestine Small	intestine
29	chr8:61627800-61638200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr8:61627800-61644400	Weak transcription	Fetal Kidney	kidney
31	chr8:61628200-61636200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:61628400-61629600	Weak transcription	Stomach Mucosa	stomach
33	chr8:61628600-61630000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:61628800-61631600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr8:61628800-61632200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:61628800-61634200	Weak transcription	HSMMtube	muscle
37	chr8:61628800-61634600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr8:61628800-61636400	Weak transcription	Hela-S3	cervix
39	chr8:61628800-61636600	Weak transcription	NHEK	skin
40	chr8:61629000-61630600	Weak transcription	Psoas Muscle	Psoas
41	chr8:61629000-61632200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr8:61629000-61632800	Weak transcription	Small Intestine	intestine
43	chr8:61629000-61633800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr8:61629000-61634000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr8:61629000-61634200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr8:61629000-61634200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:61629000-61634400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr8:61629000-61635800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr8:61629000-61636000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr8:61629000-61636000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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