Variant report

Variant	rs7836586
Chromosome Location	chr8:61655690-61655691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61590410..61592571-chr8:61654156..61656255,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10093135	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103011	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10109193	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1038351	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1038352	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10448027	0.89[EUR][1000 genomes]
rs10808711	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10808712	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10808713	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957154	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10957155	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10957156	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957158	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10957161	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11985638	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11986742	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11988338	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11990495	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991467	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11992809	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11993480	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11993490	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11993896	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11995234	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12544305	0.94[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12681737	0.88[ASN][1000 genomes]
rs13255519	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264014	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269752	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13277976	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384688	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1483206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926407	0.84[ASN][1000 genomes]
rs1905305	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964573	0.85[EUR][1000 genomes]
rs2035456	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2035457	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2054666	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2054667	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2128713	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2326598	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28653462	0.93[ASN][1000 genomes]
rs2875984	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237037	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4237038	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4289855	0.89[EUR][1000 genomes]
rs4301480	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4307377	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[MEX][hapmap]
rs4391471	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4392940	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4449834	1.00[CHB][hapmap]
rs4500113	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4526395	1.00[CHB][hapmap]
rs4540437	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4562360	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4581092	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4737563	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737565	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4738815	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4738818	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4738820	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4738821	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738822	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738824	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738827	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4738831	1.00[CHB][hapmap]
rs4738832	1.00[CHB][hapmap]
rs6471894	0.94[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6471896	0.94[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471897	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471898	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471901	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471902	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6471903	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs6471905	1.00[CHB][hapmap]
rs6982898	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6988582	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6994180	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995557	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6996597	0.85[EUR][1000 genomes]
rs6996775	0.81[EUR][1000 genomes]
rs6997208	0.85[EUR][1000 genomes]
rs6997222	0.80[EUR][1000 genomes]
rs7000766	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000957	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7002806	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7005873	1.00[CHB][hapmap];0.91[CHD][hapmap];0.80[TSI][hapmap]
rs7009754	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7011972	0.92[ASW][hapmap];0.94[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7012450	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017676	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs730085	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7814114	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7816126	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7816621	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.84[ASN][1000 genomes]
rs7823484	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7826035	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7834076	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7834977	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7838426	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840098	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7842389	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7842498	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7843033	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7845701	0.93[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7846065	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900502	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9298040	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298042	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9643371	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9650201	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61638600-61664200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr8:61644200-61659200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:61644800-61659400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:61646200-61656400	Weak transcription	Liver	Liver
5	chr8:61648800-61656600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:61648800-61663800	Weak transcription	HUVEC	blood vessel
7	chr8:61649000-61663800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:61649200-61660800	Weak transcription	Small Intestine	intestine
9	chr8:61651600-61657000	Enhancers	Brain Substantia Nigra	brain
10	chr8:61651600-61664600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:61651800-61656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:61651800-61656600	Weak transcription	Right Atrium	heart
13	chr8:61652000-61663600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:61653200-61663400	Weak transcription	Fetal Brain Female	brain
15	chr8:61653600-61656400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:61653600-61656600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:61653600-61656600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:61653800-61655800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr8:61653800-61656200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
20	chr8:61653800-61656800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:61653800-61657000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:61653800-61657400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr8:61653800-61658600	Strong transcription	Primary B cells from cord blood	blood
24	chr8:61654000-61655800	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr8:61654000-61655800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:61654000-61656000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:61654000-61656000	Strong transcription	GM12878-XiMat	blood
28	chr8:61654000-61656400	Weak transcription	Fetal Heart	heart
29	chr8:61654000-61658200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr8:61654200-61655800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:61654200-61655800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:61654200-61655800	Strong transcription	Fetal Intestine Large	intestine
33	chr8:61654200-61655800	Strong transcription	Fetal Thymus	thymus
34	chr8:61654200-61655800	Genic enhancers	HSMM	muscle
35	chr8:61654200-61656000	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr8:61654200-61656000	Strong transcription	Primary T cells from cord blood	blood
37	chr8:61654200-61656000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr8:61654200-61656000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr8:61654200-61656000	Strong transcription	Fetal Intestine Small	intestine
40	chr8:61654200-61656000	Strong transcription	Fetal Stomach	stomach
41	chr8:61654200-61656000	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr8:61654200-61656400	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr8:61654600-61655800	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:61654600-61655800	Genic enhancers	Brain Germinal Matrix	brain
45	chr8:61654600-61655800	Strong transcription	Right Ventricle	heart
46	chr8:61654600-61656600	Weak transcription	Psoas Muscle	Psoas
47	chr8:61654800-61656600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr8:61655000-61655800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
49	chr8:61655000-61656200	Enhancers	Brain Angular Gyrus	brain
50	chr8:61655000-61660200	Weak transcription	K562	blood

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