Variant report

Variant	rs7017676
Chromosome Location	chr8:61691360-61691361
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10093135	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10103011	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10109193	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1038351	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1038352	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10448027	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10808711	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10808712	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10808713	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10957154	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10957155	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10957156	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957158	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957161	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10957162	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11985638	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986059	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11986742	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11988338	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11989183	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11990495	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11991467	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992809	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993480	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11993490	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11993896	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11995234	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12544305	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12681737	0.86[ASN][1000 genomes]
rs13255519	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13264014	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13277976	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384688	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1483206	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16926407	0.81[ASN][1000 genomes]
rs1905305	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2035456	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2035457	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2054666	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054667	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2128713	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2326598	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28653462	0.91[ASN][1000 genomes]
rs2875984	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237037	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4237038	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4289855	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4301480	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4307377	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4387010	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4391471	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4392940	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4416857	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4449834	1.00[CHB][hapmap]
rs4500113	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507803	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4526395	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4540437	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4562360	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4581092	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4737563	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737565	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4738815	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4738818	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4738820	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4738821	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738822	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738824	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738827	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4738831	1.00[CHB][hapmap]
rs4738832	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs6471894	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6471896	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471897	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471898	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471901	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471902	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6471903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs6471905	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6982898	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6988582	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs6994180	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6995557	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6996597	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6996775	0.89[EUR][1000 genomes]
rs6997208	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6997222	0.88[EUR][1000 genomes]
rs7000766	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7000957	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7002806	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005873	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs7009754	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011972	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7012450	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7016832	0.87[EUR][1000 genomes]
rs730085	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7814114	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7816126	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7816621	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7823484	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826035	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7834076	0.83[EUR][1000 genomes]
rs7834977	0.88[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7836586	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7838426	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7840098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7842389	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842498	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843033	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844902	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7845701	0.87[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7846065	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs900502	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9298040	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9298042	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9643371	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9650201	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv1797364	chr8:61658362-61696231	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3337994	chr8:61687698-61692296	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61672000-61694400	Weak transcription	A549	lung
2	chr8:61672200-61693400	Weak transcription	Hela-S3	cervix
3	chr8:61672200-61694000	Weak transcription	HUVEC	blood vessel
4	chr8:61677000-61691800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:61680000-61698600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:61680200-61694800	Weak transcription	Lung	lung
7	chr8:61680200-61694800	Weak transcription	K562	blood
8	chr8:61680200-61696200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:61680200-61704200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr8:61680200-61705200	Weak transcription	Esophagus	oesophagus
11	chr8:61680200-61710400	Weak transcription	Pancreas	Pancrea
12	chr8:61680400-61694600	Weak transcription	Placenta	Placenta
13	chr8:61681000-61694400	Weak transcription	HSMMtube	muscle
14	chr8:61681200-61693600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:61681200-61693600	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:61681200-61694800	Weak transcription	Gastric	stomach
17	chr8:61681200-61696200	Weak transcription	Right Ventricle	heart
18	chr8:61681200-61698600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr8:61681200-61700400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr8:61681200-61705200	Weak transcription	Spleen	Spleen
21	chr8:61681400-61693600	Weak transcription	Dnd41	blood
22	chr8:61682200-61705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr8:61682600-61694800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:61683400-61694000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr8:61683600-61691400	Weak transcription	Fetal Intestine Large	intestine
26	chr8:61683600-61711200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr8:61683800-61692800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr8:61683800-61693800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr8:61683800-61695800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr8:61684000-61692200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr8:61685200-61691800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr8:61685200-61704200	Weak transcription	Small Intestine	intestine
33	chr8:61686000-61692600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:61686000-61698600	Weak transcription	Fetal Intestine Small	intestine
35	chr8:61686200-61693600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr8:61686200-61693600	Weak transcription	HSMM	muscle
37	chr8:61686200-61694400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:61686200-61694800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr8:61686200-61694800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr8:61686600-61691400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr8:61686800-61693600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:61686800-61694800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:61687000-61693600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr8:61687000-61694800	Weak transcription	Colon Smooth Muscle	Colon
45	chr8:61687200-61692000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr8:61687200-61692200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr8:61687200-61693600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr8:61687200-61694000	Weak transcription	Fetal Thymus	thymus
49	chr8:61687200-61704200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:61687200-61704200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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