Variant report

Variant	rs11986059
Chromosome Location	chr8:61750002-61750003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61744951..61747188-chr8:61749235..61750993,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10103011	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10109193	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1038352	0.82[ASN][1000 genomes]
rs10448027	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10808712	0.90[CHB][hapmap]
rs10808713	1.00[CHB][hapmap]
rs10957156	0.90[CHB][hapmap]
rs10957158	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10957161	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10957162	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985638	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs11986742	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11988338	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11989183	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991467	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11992809	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs11993896	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12544305	0.89[CHB][hapmap]
rs13255519	1.00[CHB][hapmap]
rs13277976	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1384688	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2035456	0.88[CHB][hapmap]
rs2054666	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2054667	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2128713	0.90[CHB][hapmap]
rs2326598	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2875984	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4237037	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4237038	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4289855	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4301480	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4307377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4387010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4391471	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4392940	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4416857	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4449834	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4500113	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4507803	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4526395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4540437	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4562360	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4581092	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4737563	1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4737565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4738815	0.90[CHB][hapmap]
rs4738818	0.90[CHB][hapmap]
rs4738821	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4738822	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4738824	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4738827	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4738831	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4738832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471894	0.89[CHB][hapmap]
rs6471896	0.89[CHB][hapmap]
rs6471898	1.00[CHB][hapmap]
rs6471901	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6471902	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471903	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982898	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6996597	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996775	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6997208	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997222	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7000766	1.00[CHB][hapmap]
rs7000957	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002806	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7005873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7009754	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7011972	0.89[CHB][hapmap]
rs7016832	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7017676	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs730085	1.00[CHB][hapmap]
rs7816621	0.89[CHB][hapmap]
rs7823484	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7826035	0.90[CHB][hapmap]
rs7834977	0.88[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7836586	1.00[CHB][hapmap]
rs7840098	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7842389	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7842498	1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7843033	0.82[ASN][1000 genomes]
rs7844586	0.85[EUR][1000 genomes]
rs7844902	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900502	0.90[CHB][hapmap]
rs9298042	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9643371	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61705800-61755000	Weak transcription	Psoas Muscle	Psoas
2	chr8:61718800-61781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:61720800-61752600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:61729200-61751600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:61731800-61751400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:61732000-61752000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:61733200-61750800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:61736400-61752600	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:61737800-61760800	Weak transcription	Stomach Mucosa	stomach
10	chr8:61739400-61755400	Weak transcription	Esophagus	oesophagus
11	chr8:61740400-61780200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr8:61740600-61765000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:61741000-61750800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:61741200-61760200	Strong transcription	Primary B cells from peripheral blood	blood
15	chr8:61741200-61763800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:61741200-61770600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:61741400-61751800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr8:61741400-61752600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr8:61741400-61761800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr8:61741400-61762200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:61741400-61764600	Weak transcription	Osteobl	bone
22	chr8:61741600-61762400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:61741800-61751200	Strong transcription	Primary T cells from cord blood	blood
24	chr8:61741800-61777600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:61741800-61780800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:61742000-61750800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr8:61742200-61778800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:61742800-61751200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:61743000-61757400	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr8:61743400-61750800	Weak transcription	Aorta	Aorta
31	chr8:61743400-61753600	Weak transcription	Spleen	Spleen
32	chr8:61743400-61777400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr8:61743600-61750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:61743800-61752600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr8:61744200-61750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr8:61744200-61755400	Weak transcription	Pancreas	Pancrea
37	chr8:61744400-61750600	Weak transcription	Right Ventricle	heart
38	chr8:61744400-61754000	Weak transcription	Gastric	stomach
39	chr8:61744600-61764600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:61745600-61753800	Weak transcription	Fetal Stomach	stomach
41	chr8:61746000-61750600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr8:61746000-61750600	Weak transcription	NHEK	skin
43	chr8:61746200-61750800	Weak transcription	Fetal Heart	heart
44	chr8:61747200-61752000	Strong transcription	Dnd41	blood
45	chr8:61747200-61763800	Strong transcription	Primary B cells from cord blood	blood
46	chr8:61747400-61752200	Strong transcription	Hela-S3	cervix
47	chr8:61747400-61759800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr8:61747600-61752200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr8:61747600-61758600	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr8:61747600-61760000	Strong transcription	HSMM	muscle

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