Variant report

Variant	rs7834977
Chromosome Location	chr8:61725786-61725787
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr8:61725775-61726296	K562	blood:	n/a	n/a
2	CEBPB	chr8:61725658-61725843	HepG2	liver:	n/a	chr8:61725720-61725731

Variant related genes	Relation type
ENSG00000254432	TF binding region

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10093135	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10103011	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10109193	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1038351	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1038352	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10448027	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10808711	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10808712	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs10808713	0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957154	0.87[EUR][1000 genomes]
rs10957155	0.87[EUR][1000 genomes]
rs10957156	0.88[CHB][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10957158	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957161	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10957162	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11985638	0.88[CHB][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11986059	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11986742	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11988338	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11989183	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11990495	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11991467	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11992809	0.86[CHB][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11993480	0.86[ASN][1000 genomes]
rs11993490	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11993896	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11995234	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12544305	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs12681737	0.83[ASN][1000 genomes]
rs13255519	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13264014	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13277976	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1384688	0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1483206	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1905305	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2035456	0.86[CHB][hapmap];0.87[EUR][1000 genomes]
rs2035457	0.87[EUR][1000 genomes]
rs2054666	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2054667	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2128713	0.88[CHB][hapmap];0.87[EUR][1000 genomes]
rs2326598	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28653462	0.84[ASN][1000 genomes]
rs2875984	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4237037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4237038	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4289855	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4301480	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4307377	0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4387010	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4391471	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4392940	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4416857	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4449834	0.88[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4500113	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4507803	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4526395	0.86[CHB][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4540437	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4562360	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4581092	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737563	0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4737565	0.88[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4738815	0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs4738818	0.88[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4738820	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4738821	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4738822	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4738824	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4738827	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738831	0.88[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4738832	0.88[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6471894	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471896	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471897	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6471898	0.86[CHB][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6471901	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471903	0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6471905	0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6982898	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6988582	1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs6994180	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6995557	0.87[EUR][1000 genomes]
rs6996597	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6996775	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6997208	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6997222	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7000766	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7000957	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7002806	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7005873	0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7009754	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7011972	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7012450	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7016832	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7017676	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs730085	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7814114	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7816126	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7816621	0.86[CHB][hapmap]
rs7823484	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7826035	0.88[CHB][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7836586	0.86[CHB][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7838426	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7840098	0.88[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7842389	0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7842498	0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7843033	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7844902	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7845701	1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7846065	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs900502	0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs9298040	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9298042	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9643371	0.88[CHB][hapmap]
rs9650201	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1019330	chr8:61697104-61744335	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61691200-61742800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:61695000-61743000	Weak transcription	Placenta	Placenta
3	chr8:61696400-61736400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:61704400-61745000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:61705400-61728200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr8:61705600-61725800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:61705600-61726600	Weak transcription	Right Ventricle	heart
8	chr8:61705600-61728000	Weak transcription	Small Intestine	intestine
9	chr8:61705600-61742400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:61705600-61742600	Weak transcription	Spleen	Spleen
11	chr8:61705600-61743000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:61705600-61743000	Weak transcription	Fetal Stomach	stomach
13	chr8:61705600-61743000	Weak transcription	Lung	lung
14	chr8:61705800-61733400	Weak transcription	Adipose Nuclei	Adipose
15	chr8:61705800-61735000	Weak transcription	Brain Substantia Nigra	brain
16	chr8:61705800-61742400	Weak transcription	Gastric	stomach
17	chr8:61705800-61755000	Weak transcription	Psoas Muscle	Psoas
18	chr8:61708800-61736400	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:61708800-61739000	Weak transcription	A549	lung
20	chr8:61709600-61728200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:61711000-61742400	Weak transcription	Pancreas	Pancrea
22	chr8:61711800-61743800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:61712000-61734400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:61718200-61740400	Weak transcription	Brain Angular Gyrus	brain
25	chr8:61718200-61749400	Weak transcription	Fetal Kidney	kidney
26	chr8:61718800-61781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr8:61720400-61742400	Weak transcription	NH-A	brain
28	chr8:61720600-61727200	Weak transcription	HUVEC	blood vessel
29	chr8:61720600-61728200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:61720600-61742400	Weak transcription	Fetal Brain Female	brain
31	chr8:61720800-61726000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr8:61720800-61726800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr8:61720800-61727400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr8:61720800-61728000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr8:61720800-61752600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:61721000-61726000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:61721000-61726200	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr8:61721000-61727200	Strong transcription	Primary B cells from cord blood	blood
39	chr8:61721000-61727400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr8:61721200-61725800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr8:61721400-61727600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr8:61721400-61733400	Weak transcription	HMEC	breast
43	chr8:61721600-61727400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr8:61721600-61727600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr8:61721800-61726000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr8:61722000-61734400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr8:61722000-61742800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr8:61722200-61734400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr8:61722200-61736400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr8:61722400-61727800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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