The 2.0 version of rSNPBase

Variant report

Variant rs10978227
Chromosome Location chr9:108500679-108500680
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:108495400-108501400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
2 chr9:108495400-108501600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr9:108496400-108500800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr9:108497600-108501600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
5 chr9:108497600-108510800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr9:108498000-108511800 Weak transcription K562 blood
7 chr9:108498000-108513200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr9:108498200-108501200 ZNF genes & repeats Fetal Intestine Small intestine
9 chr9:108498200-108510800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr9:108498200-108513400 Weak transcription HSMMtube muscle
11 chr9:108498400-108520000 Weak transcription Fetal Heart heart
12 chr9:108498400-108520400 Weak transcription Psoas Muscle Psoas
13 chr9:108498600-108510000 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr9:108498600-108510200 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr9:108498600-108510600 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr9:108498800-108510400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr9:108498800-108514600 Weak transcription Small Intestine intestine
18 chr9:108499000-108510200 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr9:108499000-108510200 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr9:108499000-108513400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr9:108499200-108501200 ZNF genes & repeats Fetal Intestine Large intestine
22 chr9:108499200-108510600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr9:108499200-108515000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr9:108499400-108510800 Weak transcription Monocytes-CD14+_RO01746 blood
25 chr9:108499400-108511600 Weak transcription Left Ventricle heart
26 chr9:108499400-108513400 Weak transcription Stomach Smooth Muscle stomach
27 chr9:108499400-108514800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr9:108499400-108516000 Weak transcription Brain Anterior Caudate brain
29 chr9:108499400-108516000 Weak transcription Brain Cingulate Gyrus brain
30 chr9:108499600-108511600 Weak transcription Pancreas Pancrea
31 chr9:108499800-108510400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr9:108499800-108510400 Weak transcription Liver Liver
33 chr9:108499800-108513400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr9:108499800-108513400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr9:108499800-108513400 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr9:108499800-108514800 Weak transcription Fetal Kidney kidney
37 chr9:108500000-108502400 Strong transcription Primary hematopoietic stem cells short term culture blood
38 chr9:108500000-108504400 Strong transcription Primary B cells from peripheral blood blood
39 chr9:108500000-108504400 Weak transcription HepG2 liver
40 chr9:108500000-108511400 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr9:108500000-108511600 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr9:108500000-108513200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
43 chr9:108500000-108513400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr9:108500000-108513400 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr9:108500200-108510800 Weak transcription Duodenum Mucosa Duodenum
46 chr9:108500200-108513400 Weak transcription Thymus Thymus
47 chr9:108500400-108501800 Weak transcription Spleen Spleen
48 chr9:108500400-108510200 Weak transcription GM12878-XiMat blood
49 chr9:108500400-108510400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr9:108500400-108510400 Weak transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015