Variant report

Variant	rs10978253
Chromosome Location	chr9:108547518-108547519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108207677..108209988-chr9:108545420..108547936,2	K562	blood:

Extended variants
information (count: 245 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:240)

rs_ID	r²[population]
rs10046892	0.99[ASN][1000 genomes]
rs10114077	0.99[ASN][1000 genomes]
rs10114109	0.99[ASN][1000 genomes]
rs10114738	0.99[ASN][1000 genomes]
rs10114831	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10115748	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10115852	0.98[ASN][1000 genomes]
rs10116066	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10116270	0.99[ASN][1000 genomes]
rs10117187	0.99[ASN][1000 genomes]
rs10118661	0.99[ASN][1000 genomes]
rs10119128	0.97[ASN][1000 genomes]
rs10121582	0.99[ASN][1000 genomes]
rs10121677	0.98[ASN][1000 genomes]
rs10121695	0.94[ASN][1000 genomes]
rs10122308	0.97[ASN][1000 genomes]
rs10123642	0.99[ASN][1000 genomes]
rs10124738	0.98[ASN][1000 genomes]
rs10125298	0.99[ASN][1000 genomes]
rs10125446	0.99[ASN][1000 genomes]
rs10156569	0.99[ASN][1000 genomes]
rs10156571	0.99[ASN][1000 genomes]
rs10217358	0.98[ASN][1000 genomes]
rs10217508	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10441744	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10512340	0.99[ASN][1000 genomes]
rs10512341	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10739213	0.99[ASN][1000 genomes]
rs10759128	0.96[ASN][1000 genomes]
rs10759132	0.99[ASN][1000 genomes]
rs10759133	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10759134	0.99[ASN][1000 genomes]
rs10759135	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10759136	1.00[ASN][1000 genomes]
rs10759137	0.99[ASN][1000 genomes]
rs10759138	0.99[ASN][1000 genomes]
rs10759143	0.80[EUR][1000 genomes]
rs10759144	0.80[EUR][1000 genomes]
rs10816294	0.86[ASN][1000 genomes]
rs10816295	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10816296	0.85[ASN][1000 genomes]
rs10816297	0.87[ASN][1000 genomes]
rs10816298	0.87[ASN][1000 genomes]
rs10816299	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10816300	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10816301	0.99[ASN][1000 genomes]
rs10816302	0.99[ASN][1000 genomes]
rs10816304	0.99[ASN][1000 genomes]
rs10816308	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10816310	0.97[ASN][1000 genomes]
rs10816311	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10816312	0.99[ASN][1000 genomes]
rs10816313	0.99[ASN][1000 genomes]
rs10816314	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10816316	0.86[ASN][1000 genomes]
rs10816318	0.99[ASN][1000 genomes]
rs10816319	0.99[ASN][1000 genomes]
rs10816324	1.00[ASN][1000 genomes]
rs10816328	0.85[ASN][1000 genomes]
rs10816330	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816331	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10816332	0.93[ASN][1000 genomes]
rs10816334	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10816336	0.97[ASN][1000 genomes]
rs10816337	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10816338	0.90[ASN][1000 genomes]
rs10816345	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10816346	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10816347	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10978196	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10978198	0.83[ASN][1000 genomes]
rs10978202	0.86[ASN][1000 genomes]
rs10978203	0.86[ASN][1000 genomes]
rs10978209	0.96[ASN][1000 genomes]
rs10978210	0.96[ASN][1000 genomes]
rs10978211	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10978220	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10978222	0.99[ASN][1000 genomes]
rs10978223	0.99[ASN][1000 genomes]
rs10978226	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10978227	0.99[ASN][1000 genomes]
rs10978228	0.99[ASN][1000 genomes]
rs10978230	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10978232	0.96[ASN][1000 genomes]
rs10978233	0.96[ASN][1000 genomes]
rs10978234	0.99[ASN][1000 genomes]
rs10978235	0.99[ASN][1000 genomes]
rs10978236	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10978239	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10978240	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10978241	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10978242	0.99[ASN][1000 genomes]
rs10978251	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10978252	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10978255	0.98[ASN][1000 genomes]
rs10978256	0.92[ASN][1000 genomes]
rs10978257	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10978259	0.99[ASN][1000 genomes]
rs10978263	0.98[ASN][1000 genomes]
rs10978264	0.98[ASN][1000 genomes]
rs10978265	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10978267	0.98[ASN][1000 genomes]
rs10978300	0.80[EUR][1000 genomes]
rs10978301	0.80[EUR][1000 genomes]
rs10978302	0.80[EUR][1000 genomes]
rs10978306	0.80[AMR][1000 genomes]
rs1124097	0.86[ASN][1000 genomes]
rs11506857	0.80[EUR][1000 genomes]
rs11506858	0.80[EUR][1000 genomes]
rs11532966	0.96[ASN][1000 genomes]
rs11562290	0.99[ASN][1000 genomes]
rs12001759	1.00[ASN][1000 genomes]
rs12003526	1.00[ASN][1000 genomes]
rs12337178	0.99[ASN][1000 genomes]
rs12338812	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338851	1.00[ASN][1000 genomes]
rs12339468	0.99[ASN][1000 genomes]
rs12341846	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341885	0.98[ASN][1000 genomes]
rs12342953	1.00[ASN][1000 genomes]
rs12343579	0.92[ASN][1000 genomes]
rs12344129	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12344225	0.98[ASN][1000 genomes]
rs12345343	0.99[ASN][1000 genomes]
rs12346348	0.99[ASN][1000 genomes]
rs12347783	1.00[ASN][1000 genomes]
rs12347903	0.85[ASN][1000 genomes]
rs12348107	0.98[ASN][1000 genomes]
rs12348647	0.93[ASN][1000 genomes]
rs12684672	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13283916	0.97[ASN][1000 genomes]
rs13286237	0.95[ASN][1000 genomes]
rs13301124	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1509424	0.80[EUR][1000 genomes]
rs1567369	0.92[ASN][1000 genomes]
rs1979992	1.00[ASN][1000 genomes]
rs1979993	1.00[ASN][1000 genomes]
rs2136406	0.95[ASN][1000 genomes]
rs2136407	0.98[ASN][1000 genomes]
rs2136408	0.99[ASN][1000 genomes]
rs2136410	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2175121	0.99[ASN][1000 genomes]
rs2175122	0.99[ASN][1000 genomes]
rs2271246	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2417621	0.80[EUR][1000 genomes]
rs28579191	0.96[ASN][1000 genomes]
rs2900400	0.80[EUR][1000 genomes]
rs35164306	0.99[ASN][1000 genomes]
rs3817141	0.97[ASN][1000 genomes]
rs4292753	0.80[EUR][1000 genomes]
rs4360347	0.99[ASN][1000 genomes]
rs4563949	0.80[EUR][1000 genomes]
rs55831325	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6477453	0.99[ASN][1000 genomes]
rs6477454	0.99[ASN][1000 genomes]
rs6477455	0.99[ASN][1000 genomes]
rs6477456	0.99[ASN][1000 genomes]
rs6477457	0.97[ASN][1000 genomes]
rs6477459	0.99[ASN][1000 genomes]
rs6477460	0.97[ASN][1000 genomes]
rs6477462	0.99[ASN][1000 genomes]
rs6477463	0.99[ASN][1000 genomes]
rs6477464	0.99[ASN][1000 genomes]
rs6477466	0.97[ASN][1000 genomes]
rs6477469	0.80[EUR][1000 genomes]
rs6477472	0.80[EUR][1000 genomes]
rs66993159	0.98[ASN][1000 genomes]
rs67705477	0.98[ASN][1000 genomes]
rs7020276	0.99[ASN][1000 genomes]
rs7020523	0.99[ASN][1000 genomes]
rs7021342	0.94[ASN][1000 genomes]
rs7021727	0.99[ASN][1000 genomes]
rs7022124	0.99[ASN][1000 genomes]
rs7024111	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7024278	0.99[ASN][1000 genomes]
rs7024357	0.80[EUR][1000 genomes]
rs7025950	0.97[ASN][1000 genomes]
rs7026814	0.99[ASN][1000 genomes]
rs7026968	0.99[ASN][1000 genomes]
rs7028906	0.87[ASN][1000 genomes]
rs7029064	0.96[ASN][1000 genomes]
rs7029124	0.97[ASN][1000 genomes]
rs7029200	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7030236	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7030399	0.98[ASN][1000 genomes]
rs7030619	0.96[ASN][1000 genomes]
rs7031063	0.99[ASN][1000 genomes]
rs7031360	0.99[ASN][1000 genomes]
rs7031431	0.98[ASN][1000 genomes]
rs7037785	0.96[ASN][1000 genomes]
rs7038788	0.99[ASN][1000 genomes]
rs7040532	0.99[ASN][1000 genomes]
rs7040890	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7043222	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7046212	0.99[ASN][1000 genomes]
rs7046293	0.99[ASN][1000 genomes]
rs7046947	0.98[ASN][1000 genomes]
rs7047435	0.99[ASN][1000 genomes]
rs7047678	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73522059	0.99[ASN][1000 genomes]
rs7846853	0.99[ASN][1000 genomes]
rs7846993	0.99[ASN][1000 genomes]
rs7848176	0.99[ASN][1000 genomes]
rs7850037	0.88[ASN][1000 genomes]
rs7852501	0.96[ASN][1000 genomes]
rs7853483	0.95[ASN][1000 genomes]
rs7854472	0.98[ASN][1000 genomes]
rs7856126	0.98[ASN][1000 genomes]
rs7856356	0.94[ASN][1000 genomes]
rs7858409	0.97[ASN][1000 genomes]
rs7858663	0.99[ASN][1000 genomes]
rs7861268	0.80[EUR][1000 genomes]
rs7861670	0.99[ASN][1000 genomes]
rs7862345	0.89[ASN][1000 genomes]
rs7862792	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7862921	0.99[ASN][1000 genomes]
rs7866285	0.99[ASN][1000 genomes]
rs7867049	0.98[ASN][1000 genomes]
rs7867239	0.95[ASN][1000 genomes]
rs7867503	0.99[ASN][1000 genomes]
rs7867973	0.99[ASN][1000 genomes]
rs7869654	0.98[ASN][1000 genomes]
rs7871299	0.99[ASN][1000 genomes]
rs7871452	0.99[ASN][1000 genomes]
rs7871495	0.91[ASN][1000 genomes]
rs7872125	0.80[EUR][1000 genomes]
rs7873663	0.99[ASN][1000 genomes]
rs7874069	0.98[ASN][1000 genomes]
rs7875434	0.99[ASN][1000 genomes]
rs872245	0.80[EUR][1000 genomes]
rs872246	0.80[EUR][1000 genomes]
rs9696294	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9696296	0.88[ASN][1000 genomes]
rs9777628	0.99[ASN][1000 genomes]
rs9969715	0.99[ASN][1000 genomes]
rs9969789	0.86[ASN][1000 genomes]
rs9987409	0.98[ASN][1000 genomes]
rs9987489	0.98[ASN][1000 genomes]
rs9987692	0.96[ASN][1000 genomes]
rs9987932	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
5	esv1846655	chr9:108536712-108569642	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10978253	TMEM38B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108515200-108560600	Weak transcription	Ovary	ovary
2	chr9:108530400-108552600	Weak transcription	Pancreas	Pancrea
3	chr9:108539200-108548400	Weak transcription	Primary B cells from cord blood	blood
4	chr9:108539200-108552200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:108546800-108547800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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