Variant report
Variant | rs12341846 |
---|---|
Chromosome Location | chr9:108532391-108532392 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-TAL2-4 | chr9:108530807-108535529 | NONHSAT133828 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10046892 | 0.99[ASN][1000 genomes] |
rs10114077 | 0.99[ASN][1000 genomes] |
rs10114109 | 0.99[ASN][1000 genomes] |
rs10114738 | 0.99[ASN][1000 genomes] |
rs10114831 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10115748 | 0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10115852 | 0.98[ASN][1000 genomes] |
rs10116066 | 0.80[EUR][1000 genomes] |
rs10116270 | 0.99[ASN][1000 genomes] |
rs10117187 | 0.99[ASN][1000 genomes] |
rs10118661 | 0.99[ASN][1000 genomes] |
rs10119128 | 0.97[ASN][1000 genomes] |
rs10121582 | 0.99[ASN][1000 genomes] |
rs10121677 | 0.98[ASN][1000 genomes] |
rs10121695 | 0.94[ASN][1000 genomes] |
rs10122308 | 0.97[ASN][1000 genomes] |
rs10123642 | 0.99[ASN][1000 genomes] |
rs10124738 | 0.98[ASN][1000 genomes] |
rs10125298 | 0.99[ASN][1000 genomes] |
rs10125446 | 0.99[ASN][1000 genomes] |
rs10156569 | 0.99[ASN][1000 genomes] |
rs10156571 | 0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10217358 | 0.98[ASN][1000 genomes] |
rs10217508 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10441744 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10512340 | 0.99[ASN][1000 genomes] |
rs10512341 | 0.80[EUR][1000 genomes] |
rs10739213 | 0.99[ASN][1000 genomes] |
rs10759128 | 0.96[ASN][1000 genomes] |
rs10759132 | 0.99[ASN][1000 genomes] |
rs10759133 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10759134 | 0.99[ASN][1000 genomes] |
rs10759135 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10759136 | 1.00[ASN][1000 genomes] |
rs10759137 | 0.99[ASN][1000 genomes] |
rs10759138 | 0.99[ASN][1000 genomes] |
rs10759143 | 0.80[EUR][1000 genomes] |
rs10759144 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs10816294 | 0.86[ASN][1000 genomes] |
rs10816295 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10816296 | 0.85[ASN][1000 genomes] |
rs10816297 | 0.87[ASN][1000 genomes] |
rs10816298 | 0.87[ASN][1000 genomes] |
rs10816299 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10816300 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10816301 | 0.99[ASN][1000 genomes] |
rs10816302 | 0.99[ASN][1000 genomes] |
rs10816304 | 0.99[ASN][1000 genomes] |
rs10816308 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10816310 | 0.97[ASN][1000 genomes] |
rs10816311 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10816312 | 0.99[ASN][1000 genomes] |
rs10816313 | 0.99[ASN][1000 genomes] |
rs10816314 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10816316 | 0.86[ASN][1000 genomes] |
rs10816318 | 0.99[ASN][1000 genomes] |
rs10816319 | 0.99[ASN][1000 genomes] |
rs10816324 | 1.00[ASN][1000 genomes] |
rs10816328 | 0.85[ASN][1000 genomes] |
rs10816330 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10816331 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10816332 | 0.93[ASN][1000 genomes] |
rs10816334 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10816336 | 0.97[ASN][1000 genomes] |
rs10816337 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10816338 | 0.90[ASN][1000 genomes] |
rs10816345 | 0.80[EUR][1000 genomes] |
rs10816346 | 0.80[EUR][1000 genomes] |
rs10816347 | 0.80[EUR][1000 genomes] |
rs10978196 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10978198 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10978202 | 0.86[ASN][1000 genomes] |
rs10978203 | 0.86[ASN][1000 genomes] |
rs10978209 | 0.96[ASN][1000 genomes] |
rs10978210 | 0.96[ASN][1000 genomes] |
rs10978211 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10978220 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10978222 | 0.99[ASN][1000 genomes] |
rs10978223 | 0.99[ASN][1000 genomes] |
rs10978226 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10978227 | 0.99[ASN][1000 genomes] |
rs10978228 | 0.99[ASN][1000 genomes] |
rs10978230 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10978232 | 0.96[ASN][1000 genomes] |
rs10978233 | 0.96[ASN][1000 genomes] |
rs10978234 | 0.99[ASN][1000 genomes] |
rs10978235 | 0.99[ASN][1000 genomes] |
rs10978236 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10978239 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10978240 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10978241 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10978242 | 0.99[ASN][1000 genomes] |
rs10978251 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10978252 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10978253 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10978255 | 0.98[ASN][1000 genomes] |
rs10978256 | 0.92[ASN][1000 genomes] |
rs10978257 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10978259 | 0.99[ASN][1000 genomes] |
rs10978263 | 0.98[ASN][1000 genomes] |
rs10978264 | 0.98[ASN][1000 genomes] |
rs10978265 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10978267 | 0.98[ASN][1000 genomes] |
rs10978300 | 0.80[EUR][1000 genomes] |
rs10978301 | 0.80[EUR][1000 genomes] |
rs10978302 | 0.80[EUR][1000 genomes] |
rs1124097 | 0.86[ASN][1000 genomes] |
rs11506857 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs11506858 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs11532966 | 0.96[ASN][1000 genomes] |
rs11562290 | 0.99[ASN][1000 genomes] |
rs12001759 | 1.00[ASN][1000 genomes] |
rs12003526 | 1.00[ASN][1000 genomes] |
rs12337178 | 0.99[ASN][1000 genomes] |
rs12338812 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12338851 | 1.00[ASN][1000 genomes] |
rs12339468 | 0.99[ASN][1000 genomes] |
rs12341885 | 0.98[ASN][1000 genomes] |
rs12342953 | 1.00[ASN][1000 genomes] |
rs12343579 | 0.92[ASN][1000 genomes] |
rs12344129 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12344225 | 0.98[ASN][1000 genomes] |
rs12345343 | 0.99[ASN][1000 genomes] |
rs12346348 | 0.99[ASN][1000 genomes] |
rs12347783 | 1.00[ASN][1000 genomes] |
rs12347903 | 0.85[ASN][1000 genomes] |
rs12348107 | 0.98[ASN][1000 genomes] |
rs12348647 | 0.93[ASN][1000 genomes] |
rs12684672 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs13283916 | 0.97[ASN][1000 genomes] |
rs13286237 | 0.95[ASN][1000 genomes] |
rs13301124 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1509424 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs1567369 | 0.92[ASN][1000 genomes] |
rs1979992 | 1.00[ASN][1000 genomes] |
rs1979993 | 1.00[ASN][1000 genomes] |
rs2136406 | 0.95[ASN][1000 genomes] |
rs2136407 | 0.98[ASN][1000 genomes] |
rs2136408 | 0.99[ASN][1000 genomes] |
rs2136410 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2175121 | 0.99[ASN][1000 genomes] |
rs2175122 | 0.99[ASN][1000 genomes] |
rs2271246 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2417621 | 0.80[EUR][1000 genomes] |
rs28579191 | 0.96[ASN][1000 genomes] |
rs2900400 | 0.80[EUR][1000 genomes] |
rs35164306 | 0.99[ASN][1000 genomes] |
rs3817141 | 0.97[ASN][1000 genomes] |
rs4292753 | 0.80[EUR][1000 genomes] |
rs4360347 | 0.99[ASN][1000 genomes] |
rs4563949 | 0.80[EUR][1000 genomes] |
rs55831325 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6477453 | 0.99[ASN][1000 genomes] |
rs6477454 | 0.99[ASN][1000 genomes] |
rs6477455 | 0.99[ASN][1000 genomes] |
rs6477456 | 0.99[ASN][1000 genomes] |
rs6477457 | 0.97[ASN][1000 genomes] |
rs6477459 | 0.99[ASN][1000 genomes] |
rs6477460 | 0.97[ASN][1000 genomes] |
rs6477462 | 0.99[ASN][1000 genomes] |
rs6477463 | 0.99[ASN][1000 genomes] |
rs6477464 | 0.99[ASN][1000 genomes] |
rs6477466 | 0.97[ASN][1000 genomes] |
rs6477469 | 0.80[EUR][1000 genomes] |
rs6477472 | 0.80[EUR][1000 genomes] |
rs66993159 | 0.98[ASN][1000 genomes] |
rs67705477 | 0.98[ASN][1000 genomes] |
rs7020276 | 0.99[ASN][1000 genomes] |
rs7020523 | 0.99[ASN][1000 genomes] |
rs7021342 | 0.94[ASN][1000 genomes] |
rs7021727 | 0.99[ASN][1000 genomes] |
rs7022124 | 0.99[ASN][1000 genomes] |
rs7024111 | 0.80[EUR][1000 genomes] |
rs7024278 | 0.99[ASN][1000 genomes] |
rs7024357 | 0.80[EUR][1000 genomes] |
rs7025950 | 0.97[ASN][1000 genomes] |
rs7026814 | 0.99[ASN][1000 genomes] |
rs7026968 | 0.99[ASN][1000 genomes] |
rs7028906 | 0.87[ASN][1000 genomes] |
rs7029064 | 0.96[ASN][1000 genomes] |
rs7029124 | 0.97[ASN][1000 genomes] |
rs7029200 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7030236 | 0.80[EUR][1000 genomes] |
rs7030399 | 0.98[ASN][1000 genomes] |
rs7030619 | 0.96[ASN][1000 genomes] |
rs7031063 | 0.99[ASN][1000 genomes] |
rs7031360 | 0.99[ASN][1000 genomes] |
rs7031431 | 0.98[ASN][1000 genomes] |
rs7037785 | 0.96[ASN][1000 genomes] |
rs7038788 | 0.99[ASN][1000 genomes] |
rs7040532 | 0.99[ASN][1000 genomes] |
rs7040890 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7043222 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs7046212 | 0.99[ASN][1000 genomes] |
rs7046293 | 0.99[ASN][1000 genomes] |
rs7046947 | 0.98[ASN][1000 genomes] |
rs7047435 | 0.99[ASN][1000 genomes] |
rs7047678 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs73522059 | 0.99[ASN][1000 genomes] |
rs7846853 | 0.99[ASN][1000 genomes] |
rs7846993 | 0.99[ASN][1000 genomes] |
rs7848176 | 0.99[ASN][1000 genomes] |
rs7850037 | 0.88[ASN][1000 genomes] |
rs7852501 | 0.96[ASN][1000 genomes] |
rs7853483 | 0.95[ASN][1000 genomes] |
rs7854472 | 0.98[ASN][1000 genomes] |
rs7856126 | 0.98[ASN][1000 genomes] |
rs7856356 | 0.94[ASN][1000 genomes] |
rs7858409 | 0.97[ASN][1000 genomes] |
rs7858663 | 0.99[ASN][1000 genomes] |
rs7861268 | 0.80[EUR][1000 genomes] |
rs7861670 | 0.99[ASN][1000 genomes] |
rs7862345 | 0.89[ASN][1000 genomes] |
rs7862792 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7862921 | 0.99[ASN][1000 genomes] |
rs7866285 | 0.99[ASN][1000 genomes] |
rs7867049 | 0.98[ASN][1000 genomes] |
rs7867239 | 0.95[ASN][1000 genomes] |
rs7867503 | 0.99[ASN][1000 genomes] |
rs7867973 | 0.99[ASN][1000 genomes] |
rs7869654 | 0.98[ASN][1000 genomes] |
rs7871299 | 0.99[ASN][1000 genomes] |
rs7871452 | 0.99[ASN][1000 genomes] |
rs7871495 | 0.91[ASN][1000 genomes] |
rs7872125 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs7873663 | 0.99[ASN][1000 genomes] |
rs7874069 | 0.98[ASN][1000 genomes] |
rs7875434 | 0.99[ASN][1000 genomes] |
rs872245 | 0.80[EUR][1000 genomes] |
rs872246 | 0.80[EUR][1000 genomes] |
rs9696294 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9696296 | 0.88[ASN][1000 genomes] |
rs9777628 | 0.99[ASN][1000 genomes] |
rs9969715 | 0.99[ASN][1000 genomes] |
rs9969789 | 0.86[ASN][1000 genomes] |
rs9987409 | 0.98[ASN][1000 genomes] |
rs9987489 | 0.98[ASN][1000 genomes] |
rs9987692 | 0.96[ASN][1000 genomes] |
rs9987932 | 0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv893693 | chr9:108427062-108683134 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
2 | nsv615116 | chr9:108468129-108546438 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
3 | nsv893694 | chr9:108486533-108854018 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:108514000-108540000 | Weak transcription | HSMMtube | muscle |
2 | chr9:108515200-108545000 | Weak transcription | K562 | blood |
3 | chr9:108515200-108560600 | Weak transcription | Ovary | ovary |
4 | chr9:108515400-108536800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
5 | chr9:108515600-108538600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
6 | chr9:108517800-108538400 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
7 | chr9:108520600-108535200 | Weak transcription | Primary hematopoietic stem cells | blood |
8 | chr9:108520600-108546400 | Weak transcription | Fetal Intestine Small | intestine |
9 | chr9:108521000-108534200 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
10 | chr9:108521000-108538400 | Weak transcription | Primary B cells from cord blood | blood |
11 | chr9:108529000-108534400 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
12 | chr9:108530400-108552600 | Weak transcription | Pancreas | Pancrea |