Variant report

Variant	rs10988806
Chromosome Location	chr9:102164062-102164063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10988781	0.80[EUR][1000 genomes]
rs12337701	0.80[EUR][1000 genomes]
rs28686995	0.82[AMR][1000 genomes]
rs34728128	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs67245613	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7024617	0.84[EUR][1000 genomes]
rs7042978	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102160400-102164800	Enhancers	NHDF-Ad	bronchial
2	chr9:102160600-102166400	Enhancers	Placenta	Placenta
3	chr9:102161800-102166400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr9:102161800-102166400	Enhancers	NHLF	lung
5	chr9:102162000-102165800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:102162800-102169000	Weak transcription	Fetal Heart	heart
7	chr9:102163000-102166000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:102163000-102169000	Weak transcription	Right Ventricle	heart
9	chr9:102163600-102164200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:102163800-102164600	Enhancers	NHEK	skin
11	chr9:102163800-102164800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:102164000-102165000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:102164000-102165000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:102164000-102165200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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