Variant report

Variant	rs7024617
Chromosome Location	chr9:102139440-102139441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10117464	0.83[ASN][1000 genomes]
rs10122489	0.86[ASN][1000 genomes]
rs10988781	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10988806	0.84[EUR][1000 genomes]
rs12337701	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs188941	0.86[ASN][1000 genomes]
rs191230	0.86[ASN][1000 genomes]
rs28686995	0.85[ASN][1000 genomes]
rs323728	0.86[ASN][1000 genomes]
rs34728128	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs411102	0.86[ASN][1000 genomes]
rs67245613	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs701345	0.86[ASN][1000 genomes]
rs701346	0.86[ASN][1000 genomes]
rs7042978	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046898	chr9:102111890-102163313	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102131600-102140200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:102131800-102140200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:102131800-102140600	Weak transcription	Brain Substantia Nigra	brain
4	chr9:102132400-102148000	Weak transcription	Psoas Muscle	Psoas
5	chr9:102136600-102140000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:102136600-102140600	Weak transcription	Brain Angular Gyrus	brain
7	chr9:102139200-102146000	Enhancers	HepG2	liver
8	chr9:102139400-102139600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:102139400-102140000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:102139400-102141600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:102139400-102142000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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