Variant report

Variant	rs12337701
Chromosome Location	chr9:102114959-102114960
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10117464	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10122489	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988781	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10988806	0.80[EUR][1000 genomes]
rs188941	1.00[ASN][1000 genomes]
rs191230	1.00[ASN][1000 genomes]
rs28686995	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs323728	1.00[ASN][1000 genomes]
rs34728128	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs411102	1.00[ASN][1000 genomes]
rs67245613	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs701345	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs701346	1.00[ASN][1000 genomes]
rs701358	0.92[ASN][1000 genomes]
rs7024617	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7042978	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046898	chr9:102111890-102163313	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102113000-102115600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:102113200-102115400	Weak transcription	Liver	Liver
3	chr9:102114000-102115600	Enhancers	Fetal Muscle Trunk	muscle
4	chr9:102114000-102116800	Enhancers	NHLF	lung
5	chr9:102114200-102116400	Enhancers	Fetal Muscle Leg	muscle
6	chr9:102114200-102118200	Weak transcription	Psoas Muscle	Psoas
7	chr9:102114400-102115400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:102114400-102116000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:102114400-102116800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:102114400-102116800	Enhancers	NHDF-Ad	bronchial
11	chr9:102114600-102115000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:102114600-102116600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:102114800-102115800	Enhancers	Fetal Heart	heart
14	chr9:102114800-102131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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