Variant report

Variant	rs701358
Chromosome Location	chr9:102087625-102087626
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10117464	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10122489	0.92[ASN][1000 genomes]
rs10988781	0.81[ASN][1000 genomes]
rs12337701	0.92[ASN][1000 genomes]
rs188941	0.92[ASN][1000 genomes]
rs191230	0.92[ASN][1000 genomes]
rs28686995	0.90[ASN][1000 genomes]
rs323728	0.92[ASN][1000 genomes]
rs34728128	0.92[ASN][1000 genomes]
rs411102	0.92[ASN][1000 genomes]
rs67245613	0.90[ASN][1000 genomes]
rs701345	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs701346	0.92[ASN][1000 genomes]
rs7042978	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102087600-102088200	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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