Variant report

Variant	rs67245613
Chromosome Location	chr9:102118977-102118978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102115579..102117316-chr9:102118690..102121559,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALG2-6	chr9:102118839-102119236	NONHSAT133650

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10117464	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10122489	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10988781	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10988806	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12337701	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs188941	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs191230	0.98[ASN][1000 genomes]
rs28686995	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs323728	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34728128	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs411102	0.98[ASN][1000 genomes]
rs701345	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs701346	0.98[ASN][1000 genomes]
rs701358	0.90[ASN][1000 genomes]
rs7024617	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7042978	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046898	chr9:102111890-102163313	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102114800-102131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:102116400-102120600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:102116400-102121000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:102116400-102124400	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:102116600-102119000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:102118000-102120200	Enhancers	Adipose Nuclei	Adipose
7	chr9:102118000-102120200	Enhancers	Liver	Liver
8	chr9:102118000-102120200	Enhancers	NHDF-Ad	bronchial
9	chr9:102118000-102120800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:102118200-102119600	Enhancers	Right Ventricle	heart
11	chr9:102118200-102120200	Enhancers	Fetal Muscle Trunk	muscle
12	chr9:102118200-102121200	Enhancers	Fetal Muscle Leg	muscle
13	chr9:102118200-102123400	Enhancers	Left Ventricle	heart
14	chr9:102118200-102124600	Enhancers	Psoas Muscle	Psoas
15	chr9:102118400-102119400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:102118400-102119600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr9:102118400-102120200	Enhancers	NHLF	lung
18	chr9:102118400-102120800	Enhancers	Fetal Heart	heart
19	chr9:102118600-102119200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:102118600-102119400	Enhancers	Brain Cingulate Gyrus	brain
21	chr9:102118600-102119400	Enhancers	Brain Substantia Nigra	brain
22	chr9:102118600-102119600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:102118600-102119600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr9:102118600-102120200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:102118600-102120200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:102118600-102120200	Enhancers	Brain Hippocampus Middle	brain
27	chr9:102118600-102120400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:102118600-102120600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr9:102118800-102119000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:102118800-102119200	Enhancers	Esophagus	oesophagus
31	chr9:102118800-102119400	Weak transcription	Right Atrium	heart
32	chr9:102118800-102119600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr9:102118800-102120000	Enhancers	Osteobl	bone
34	chr9:102118800-102120200	Enhancers	Brain Anterior Caudate	brain
35	chr9:102118800-102120400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:102118800-102120400	Enhancers	Stomach Smooth Muscle	stomach

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