Variant report

Variant	rs10988781
Chromosome Location	chr9:102128302-102128303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102125792..102128409-chr9:102134620..102136717,2	MCF-7	breast:
2	chr9:102121486..102123423-chr9:102126171..102128495,2	K562	blood:
3	chr9:102128251..102130553-chr9:102132131..102134825,3	K562	blood:

Variant related genes	Relation type
ENSG00000271086	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10117464	0.85[ASN][1000 genomes]
rs10122489	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10988806	0.80[EUR][1000 genomes]
rs12337701	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs188941	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs191230	0.88[ASN][1000 genomes]
rs28686995	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs323728	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34728128	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs411102	0.88[ASN][1000 genomes]
rs67245613	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs701345	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs701346	0.88[ASN][1000 genomes]
rs701358	0.81[ASN][1000 genomes]
rs7024617	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7042978	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046898	chr9:102111890-102163313	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102114800-102131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:102122800-102129800	Weak transcription	Right Ventricle	heart
3	chr9:102123400-102129800	Weak transcription	Left Ventricle	heart
4	chr9:102124400-102130200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:102124600-102128600	Weak transcription	Psoas Muscle	Psoas
6	chr9:102125000-102128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:102125000-102130400	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:102125600-102130200	Weak transcription	Fetal Brain Female	brain
9	chr9:102125800-102129600	Weak transcription	Fetal Thymus	thymus
10	chr9:102126200-102129400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:102126200-102129800	Weak transcription	Fetal Brain Male	brain
12	chr9:102126600-102131000	Enhancers	Fetal Heart	heart
13	chr9:102126800-102130400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:102127000-102129000	Enhancers	Placenta	Placenta
15	chr9:102127200-102130400	Enhancers	GM12878-XiMat	blood
16	chr9:102127200-102130400	Enhancers	NHLF	lung
17	chr9:102127400-102129800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:102127400-102130400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:102127600-102128800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:102127600-102130200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:102127600-102130200	Enhancers	NHDF-Ad	bronchial
22	chr9:102127600-102130600	Enhancers	Lung	lung
23	chr9:102127800-102128400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:102127800-102129800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:102127800-102130400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:102127800-102130600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:102127800-102130600	Enhancers	Fetal Muscle Leg	muscle
28	chr9:102128000-102128400	Enhancers	NH-A	brain
29	chr9:102128200-102128400	Bivalent Enhancer	Fetal Stomach	stomach
30	chr9:102128200-102129000	Enhancers	Right Atrium	heart
31	chr9:102128200-102129400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:102128200-102129600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:102128200-102130200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:102128200-102130800	Weak transcription	HMEC	breast

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