Variant report

Variant	rs323728
Chromosome Location	chr9:102115664-102115665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102115579..102117316-chr9:102118690..102121559,2	K562	blood:
2	chr9:102115153..102116798-chr9:102118524..102120096,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271086	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10117464	0.97[ASN][1000 genomes]
rs10122489	1.00[ASN][1000 genomes]
rs10988781	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12337701	1.00[ASN][1000 genomes]
rs188941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191230	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28686995	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34728128	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs411102	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67245613	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs701345	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs701346	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs701358	0.92[ASN][1000 genomes]
rs7024617	0.86[ASN][1000 genomes]
rs7042978	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046898	chr9:102111890-102163313	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102114000-102116800	Enhancers	NHLF	lung
2	chr9:102114200-102116400	Enhancers	Fetal Muscle Leg	muscle
3	chr9:102114200-102118200	Weak transcription	Psoas Muscle	Psoas
4	chr9:102114400-102116000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:102114400-102116800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:102114400-102116800	Enhancers	NHDF-Ad	bronchial
7	chr9:102114600-102116600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:102114800-102115800	Enhancers	Fetal Heart	heart
9	chr9:102114800-102131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:102115000-102116600	Enhancers	Adipose Nuclei	Adipose
11	chr9:102115200-102116600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:102115200-102116600	Enhancers	Osteobl	bone
13	chr9:102115400-102116200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:102115400-102116600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:102115400-102116600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:102115400-102116600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:102115400-102116600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr9:102115400-102116800	Enhancers	Liver	Liver
19	chr9:102115600-102116000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:102115600-102116200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr9:102115600-102116400	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr9:102115600-102117800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:102115600-102118200	Weak transcription	Fetal Muscle Trunk	muscle

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