Variant report

Variant	rs10117464
Chromosome Location	chr9:102084670-102084671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10122489	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10988781	0.85[ASN][1000 genomes]
rs12337701	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs188941	0.97[ASN][1000 genomes]
rs191230	0.97[ASN][1000 genomes]
rs28686995	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs323728	0.97[ASN][1000 genomes]
rs34728128	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs411102	0.97[ASN][1000 genomes]
rs67245613	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs701345	0.97[ASN][1000 genomes]
rs701346	0.97[ASN][1000 genomes]
rs701358	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7024617	0.83[ASN][1000 genomes]
rs7042978	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102084000-102084800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:102084400-102084800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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