Variant report

Variant	rs1100857
Chromosome Location	chr6:36055125-36055126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1100856	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1100859	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100860	0.86[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815806	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457879	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707994	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729674	1.00[ASN][1000 genomes]
rs851004	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851008	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851009	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851011	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851012	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851015	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851016	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851021	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851022	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851023	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851025	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs916344	0.93[CEU][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916345	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916346	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36039800-36062000	Weak transcription	Stomach Mucosa	stomach
3	chr6:36043200-36062400	Weak transcription	Small Intestine	intestine
4	chr6:36048800-36057400	Weak transcription	Fetal Heart	heart
5	chr6:36051200-36059600	Weak transcription	NHDF-Ad	bronchial
6	chr6:36051400-36058800	Weak transcription	NHEK	skin
7	chr6:36051400-36059200	Weak transcription	NH-A	brain
8	chr6:36051400-36062200	Weak transcription	K562	blood
9	chr6:36051400-36062400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:36051400-36062400	Weak transcription	Fetal Kidney	kidney
11	chr6:36051400-36063400	Weak transcription	HUVEC	blood vessel
12	chr6:36051600-36060400	Weak transcription	HSMM	muscle
13	chr6:36051600-36062600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:36051600-36062600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:36051600-36067600	Weak transcription	Brain Substantia Nigra	brain
16	chr6:36051600-36088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:36051800-36058800	Weak transcription	Osteobl	bone
18	chr6:36051800-36062400	Weak transcription	Colonic Mucosa	Colon
19	chr6:36051800-36062600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:36051800-36070600	Weak transcription	Pancreas	Pancrea
21	chr6:36051800-36070600	Weak transcription	Psoas Muscle	Psoas
22	chr6:36051800-36070800	Weak transcription	Aorta	Aorta
23	chr6:36051800-36075800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:36052000-36059200	Weak transcription	Lung	lung
25	chr6:36052000-36059800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:36052000-36059800	Weak transcription	Fetal Brain Female	brain
27	chr6:36052000-36062200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:36052000-36062600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:36052000-36062600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:36052000-36062600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:36052000-36063800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:36052000-36070600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:36052000-36070600	Weak transcription	Brain Angular Gyrus	brain
34	chr6:36052000-36070600	Weak transcription	NHLF	lung
35	chr6:36052000-36070800	Weak transcription	Esophagus	oesophagus
36	chr6:36052000-36075200	Weak transcription	Right Ventricle	heart
37	chr6:36052200-36057400	Weak transcription	HSMMtube	muscle
38	chr6:36052200-36058600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:36052200-36059000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:36052200-36059200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:36052200-36059200	Weak transcription	Thymus	Thymus
42	chr6:36052200-36059400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:36052200-36059800	Weak transcription	Left Ventricle	heart
44	chr6:36052200-36059800	Weak transcription	Ovary	ovary
45	chr6:36052200-36059800	Weak transcription	Hela-S3	cervix
46	chr6:36052200-36059800	Weak transcription	HMEC	breast
47	chr6:36052200-36062400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr6:36052200-36062600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:36052200-36062600	Weak transcription	GM12878-XiMat	blood
50	chr6:36052200-36067400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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