Variant report

Variant	rs851009
Chromosome Location	chr6:36042259-36042260
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35994000..35997973-chr6:36041645..36047090,8	K562	blood:
2	chr6:36034762..36037596-chr6:36039909..36042459,2	K562	blood:
3	chr6:36030311..36032282-chr6:36040725..36043319,2	K562	blood:
4	chr6:36039959..36043329-chr6:36045547..36048658,3	K562	blood:
5	chr6:36030311..36032609-chr6:36039359..36043319,3	K562	blood:

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1100856	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1100857	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100859	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100860	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815806	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815809	0.81[CEU][hapmap]
rs6457879	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707994	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729674	1.00[ASN][1000 genomes]
rs851004	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851008	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851011	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851016	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851021	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851022	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851023	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851025	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs916344	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916345	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916346	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:36020400-36047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:36023000-36047400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:36028200-36046000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:36028200-36046600	Weak transcription	Fetal Stomach	stomach
7	chr6:36028200-36047200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:36028200-36047800	Weak transcription	Brain Germinal Matrix	brain
9	chr6:36028200-36048400	Weak transcription	Fetal Brain Female	brain
10	chr6:36028400-36047400	Weak transcription	Colonic Mucosa	Colon
11	chr6:36028400-36047800	Weak transcription	Lung	lung
12	chr6:36028600-36043800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:36028600-36046600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:36028600-36050200	Weak transcription	Spleen	Spleen
15	chr6:36028800-36043200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:36029200-36048000	Weak transcription	NH-A	brain
17	chr6:36029600-36043400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:36029600-36047600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:36029800-36043800	Weak transcription	HMEC	breast
20	chr6:36030200-36042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:36030800-36043200	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:36031000-36042600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:36032800-36043600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr6:36033000-36046600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:36033200-36043400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:36033200-36046800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:36033400-36043400	Weak transcription	Placenta	Placenta
28	chr6:36033400-36044200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:36033400-36045600	Weak transcription	Left Ventricle	heart
30	chr6:36033400-36045600	Weak transcription	Pancreas	Pancrea
31	chr6:36033400-36045600	Weak transcription	Thymus	Thymus
32	chr6:36033400-36047800	Weak transcription	Gastric	stomach
33	chr6:36033400-36048000	Weak transcription	Fetal Brain Male	brain
34	chr6:36033400-36050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:36033600-36043200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:36033600-36048000	Weak transcription	Ovary	ovary
37	chr6:36033800-36043200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:36034400-36048000	Weak transcription	Fetal Kidney	kidney
39	chr6:36034400-36048000	Weak transcription	HSMMtube	muscle
40	chr6:36035000-36044600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr6:36035400-36045600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:36035400-36049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:36035400-36050200	Weak transcription	NHLF	lung
44	chr6:36035600-36043600	Weak transcription	NHEK	skin
45	chr6:36035600-36044600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:36035600-36046200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:36035600-36047200	Weak transcription	Brain Angular Gyrus	brain
48	chr6:36035600-36048000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:36035800-36050000	Weak transcription	Aorta	Aorta
50	chr6:36036000-36043200	Weak transcription	Osteobl	bone

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