Variant report

Variant	rs851016
Chromosome Location	chr6:36029299-36029300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36027930..36029471-chr6:36164252..36166899,2	MCF-7	breast:
2	chr6:35996207..35998463-chr6:36028825..36030932,2	MCF-7	breast:
3	chr6:36022269..36026633-chr6:36027844..36030184,4	K562	blood:

Variant related genes	Relation type
ENSG00000096070	Chromatin interaction
ENSG00000246982	Chromatin interaction
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1100856	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1100857	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100860	0.86[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815806	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457879	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707994	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729674	1.00[ASN][1000 genomes]
rs851004	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851008	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851009	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851011	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851012	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851015	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851021	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851022	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851023	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851025	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs916344	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916345	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916346	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36006400-36039800	Weak transcription	Esophagus	oesophagus
2	chr6:36017800-36029400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:36019400-36032600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:36019800-36031600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:36020000-36033800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr6:36020400-36032600	Weak transcription	Right Atrium	heart
8	chr6:36020400-36033000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:36020400-36047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:36021600-36033200	Weak transcription	Fetal Brain Male	brain
11	chr6:36022000-36032200	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:36022400-36029400	Weak transcription	HUVEC	blood vessel
14	chr6:36023000-36032200	Weak transcription	Small Intestine	intestine
15	chr6:36023000-36047400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:36023800-36030000	Strong transcription	Primary hematopoietic stem cells	blood
17	chr6:36024000-36030600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:36024200-36033800	Strong transcription	Primary B cells from cord blood	blood
19	chr6:36025400-36030400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:36026200-36029600	Strong transcription	Duodenum Mucosa	Duodenum
21	chr6:36026200-36030600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:36026200-36032400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:36026200-36032600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:36026400-36029800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr6:36026400-36030200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:36026400-36030200	Strong transcription	Thymus	Thymus
27	chr6:36026400-36030600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:36026400-36031400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:36026400-36031600	Strong transcription	Dnd41	blood
30	chr6:36026400-36032800	Strong transcription	Fetal Thymus	thymus
31	chr6:36026600-36029800	Strong transcription	HSMM	muscle
32	chr6:36026600-36031000	Strong transcription	Fetal Muscle Trunk	muscle
33	chr6:36026600-36031400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:36027000-36029400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:36027000-36029400	Strong transcription	Osteobl	bone
36	chr6:36027000-36029600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr6:36027000-36030000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:36027000-36030400	Strong transcription	Fetal Intestine Large	intestine
39	chr6:36027000-36030800	Strong transcription	Hela-S3	cervix
40	chr6:36027000-36031000	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr6:36027000-36031200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:36027000-36031200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:36027200-36029400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:36027200-36029400	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:36027200-36029600	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:36027200-36029600	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:36027200-36029600	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:36027200-36029600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:36027200-36029600	Strong transcription	Fetal Lung	lung
50	chr6:36027200-36029600	Strong transcription	Rectal Mucosa Donor 31	rectum

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