Variant report

Variant	rs851015
Chromosome Location	chr6:36031230-36031231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35992836..35995217-chr6:36030418..36034418,3	K562	blood:
2	chr6:36030311..36032609-chr6:36039359..36043319,3	K562	blood:
3	chr6:36030311..36032282-chr6:36040725..36043319,2	K562	blood:
4	chr6:36030323..36033293-chr6:36238320..36240861,2	K562	blood:
5	chr6:36024238..36026339-chr6:36030286..36032254,2	K562	blood:
6	chr6:36030980..36032556-chr6:36036979..36038589,2	K562	blood:
7	chr6:36030964..36032479-chr6:36032885..36035498,2	K562	blood:
8	chr6:36030814..36032479-chr6:36033998..36035590,2	K562	blood:
9	chr6:35993717..35997299-chr6:36030418..36035597,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1100856	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1100857	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815806	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457879	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729674	1.00[ASN][1000 genomes]
rs851004	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851008	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851016	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851021	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851022	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851023	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851025	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs916344	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916345	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36006400-36039800	Weak transcription	Esophagus	oesophagus
2	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:36019400-36032600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:36019800-36031600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:36020000-36033800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr6:36020400-36032600	Weak transcription	Right Atrium	heart
7	chr6:36020400-36033000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:36020400-36047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:36021600-36033200	Weak transcription	Fetal Brain Male	brain
10	chr6:36022000-36032200	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:36023000-36032200	Weak transcription	Small Intestine	intestine
13	chr6:36023000-36047400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:36024200-36033800	Strong transcription	Primary B cells from cord blood	blood
15	chr6:36026200-36032400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:36026200-36032600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:36026400-36031400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:36026400-36031600	Strong transcription	Dnd41	blood
19	chr6:36026400-36032800	Strong transcription	Fetal Thymus	thymus
20	chr6:36026600-36031400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:36027200-36031600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:36028000-36031600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:36028000-36032800	Weak transcription	Ovary	ovary
24	chr6:36028000-36032800	Weak transcription	Right Ventricle	heart
25	chr6:36028200-36032400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:36028200-36032400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:36028200-36032600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:36028200-36032600	Weak transcription	Brain Substantia Nigra	brain
29	chr6:36028200-36032600	Weak transcription	Fetal Kidney	kidney
30	chr6:36028200-36032600	Weak transcription	Left Ventricle	heart
31	chr6:36028200-36032600	Weak transcription	Pancreas	Pancrea
32	chr6:36028200-36032800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:36028200-36033000	Weak transcription	Gastric	stomach
34	chr6:36028200-36046000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:36028200-36046600	Weak transcription	Fetal Stomach	stomach
36	chr6:36028200-36047200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:36028200-36047800	Weak transcription	Brain Germinal Matrix	brain
38	chr6:36028200-36048400	Weak transcription	Fetal Brain Female	brain
39	chr6:36028400-36032200	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:36028400-36032400	Weak transcription	K562	blood
41	chr6:36028400-36032600	Weak transcription	Aorta	Aorta
42	chr6:36028400-36032600	Weak transcription	Brain Hippocampus Middle	brain
43	chr6:36028400-36032600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:36028400-36047400	Weak transcription	Colonic Mucosa	Colon
45	chr6:36028400-36047800	Weak transcription	Lung	lung
46	chr6:36028600-36032200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:36028600-36032200	Weak transcription	Stomach Mucosa	stomach
48	chr6:36028600-36032200	Weak transcription	A549	lung
49	chr6:36028600-36032800	Weak transcription	Brain Angular Gyrus	brain
50	chr6:36028600-36032800	Weak transcription	Brain Cingulate Gyrus	brain

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