Variant report

Variant	rs916345
Chromosome Location	chr6:36088700-36088701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35993784..35998553-chr6:36086872..36091412,11	MCF-7	breast:
2	chr6:36086449..36088959-chr6:36383375..36385135,2	K562	blood:
3	chr6:36083240..36096353-chr6:36161490..36168411,30	MCF-7	breast:
4	chr6:36088645..36090555-chr6:36286695..36290906,4	MCF-7	breast:
5	chr6:35994096..35997050-chr6:36088599..36091846,3	K562	blood:
6	chr6:36088560..36091491-chr6:36114764..36117251,2	MCF-7	breast:
7	chr6:36083349..36090492-chr6:36162486..36165995,10	K562	blood:
8	chr6:36088498..36092716-chr6:36163118..36166617,13	MCF-7	breast:
9	chr6:36087548..36090411-chr6:36326475..36328862,3	MCF-7	breast:
10	chr6:36085224..36088803-chr6:36161164..36165491,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction
ENSG00000246982	Chromatin interaction
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1100857	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100859	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100860	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815806	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815809	0.82[EUR][1000 genomes]
rs6457879	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707994	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729674	1.00[ASN][1000 genomes]
rs851004	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851008	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851009	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851011	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851012	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851015	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851016	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851021	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851022	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851023	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851025	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs916344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916346	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36051600-36088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:36068000-36091400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:36077200-36088800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:36077200-36088800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:36077200-36088800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:36077200-36094800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:36077200-36096600	Weak transcription	Fetal Brain Female	brain
9	chr6:36077400-36094800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:36077400-36096400	Weak transcription	Fetal Brain Male	brain
11	chr6:36077600-36089000	Weak transcription	A549	lung
12	chr6:36078400-36092000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:36078600-36088800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:36078600-36091400	Weak transcription	Brain Anterior Caudate	brain
15	chr6:36079200-36088800	Weak transcription	NH-A	brain
16	chr6:36079600-36088800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:36079600-36088800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:36079600-36089000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:36079600-36089000	Weak transcription	HMEC	breast
20	chr6:36079600-36091400	Weak transcription	Right Ventricle	heart
21	chr6:36079600-36092600	Weak transcription	Brain Germinal Matrix	brain
22	chr6:36079600-36094400	Weak transcription	Hela-S3	cervix
23	chr6:36079800-36088800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:36081400-36088800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:36081800-36091200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:36082000-36091400	Weak transcription	Brain Angular Gyrus	brain
27	chr6:36082000-36091400	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:36082000-36091400	Weak transcription	Brain Substantia Nigra	brain
29	chr6:36082800-36091600	Weak transcription	Psoas Muscle	Psoas
30	chr6:36084600-36097600	Weak transcription	Fetal Heart	heart
31	chr6:36084800-36090400	Enhancers	Stomach Mucosa	stomach
32	chr6:36085200-36088800	Weak transcription	Left Ventricle	heart
33	chr6:36085400-36094600	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:36085800-36092400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr6:36086400-36091400	Weak transcription	Dnd41	blood
36	chr6:36086600-36088800	Weak transcription	Fetal Stomach	stomach
37	chr6:36086600-36088800	Weak transcription	Gastric	stomach
38	chr6:36086600-36088800	Weak transcription	Pancreas	Pancrea
39	chr6:36086600-36088800	Weak transcription	Right Atrium	heart
40	chr6:36086600-36090200	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr6:36086600-36098000	Weak transcription	Aorta	Aorta
42	chr6:36087400-36089600	Enhancers	Lung	lung
43	chr6:36087600-36088800	Enhancers	Esophagus	oesophagus
44	chr6:36087600-36088800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:36087800-36089200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr6:36087800-36089400	Enhancers	Spleen	Spleen
47	chr6:36087800-36089600	Enhancers	HUVEC	blood vessel
48	chr6:36087800-36090000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
49	chr6:36087800-36092400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr6:36088000-36089200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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