Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11013034	0.92[ASN][1000 genomes]
rs11013039	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12098280	0.94[ASN][1000 genomes]
rs1475613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16916953	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16916963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16916965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16916984	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16916985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16916992	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16917001	0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16917005	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs56405917	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57461028	0.94[ASN][1000 genomes]
rs59304020	0.81[ASN][1000 genomes]
rs73595503	0.91[ASN][1000 genomes]
rs73595504	0.81[ASN][1000 genomes]
rs73595510	0.94[ASN][1000 genomes]
rs73595543	1.00[ASN][1000 genomes]
rs7914927	1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3469840	chr10:18501971-18504819	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:18493800-18503800	Weak transcription	Fetal Brain Male	brain
3	chr10:18494400-18503600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:18497800-18503000	Enhancers	Fetal Heart	heart
5	chr10:18498600-18502800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:18499200-18511000	Weak transcription	Aorta	Aorta
7	chr10:18500000-18504800	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:18500200-18506000	Weak transcription	Right Atrium	heart
9	chr10:18500400-18503600	Enhancers	Colon Smooth Muscle	Colon
10	chr10:18500800-18502200	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:18500800-18502200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:18501200-18503400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:18501400-18502600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:18501400-18503000	Enhancers	Stomach Smooth Muscle	stomach
15	chr10:18501800-18502200	Enhancers	Left Ventricle	heart
16	chr10:18501800-18502400	Enhancers	Pancreas	Pancrea
17	chr10:18502000-18502200	Enhancers	Brain Angular Gyrus	brain
18	chr10:18502000-18502200	Enhancers	Ovary	ovary
19	chr10:18502000-18502200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:18502000-18502400	Enhancers	Fetal Stomach	stomach
21	chr10:18502000-18504400	Enhancers	Cortex derived primary cultured neurospheres	brain

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