Variant report

Variant	rs16916953
Chromosome Location	chr10:18484486-18484487
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11013030	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11013039	0.84[ASN][1000 genomes]
rs12098280	0.84[ASN][1000 genomes]
rs1475613	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16916963	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16916965	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16916984	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16916985	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16916992	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs57461028	0.84[ASN][1000 genomes]
rs59304020	0.97[ASN][1000 genomes]
rs73595503	0.87[ASN][1000 genomes]
rs73595504	0.97[ASN][1000 genomes]
rs73595510	0.84[ASN][1000 genomes]
rs73595543	0.84[ASN][1000 genomes]
rs7914927	1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:18481800-18490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:18483000-18485400	Enhancers	Fetal Stomach	stomach
9	chr10:18483400-18484800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:18483400-18485000	Enhancers	NHLF	lung
11	chr10:18483600-18484800	Enhancers	Fetal Lung	lung
12	chr10:18483600-18484800	Enhancers	Osteobl	bone
13	chr10:18483600-18487800	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:18483800-18484600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:18483800-18484800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:18483800-18485000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:18484000-18484800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:18484000-18484800	Enhancers	Ovary	ovary
19	chr10:18484000-18484800	Enhancers	NH-A	brain
20	chr10:18484000-18484800	Enhancers	NHDF-Ad	bronchial
21	chr10:18484000-18485000	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr10:18484000-18486600	Enhancers	Fetal Heart	heart
23	chr10:18484200-18484600	Enhancers	Right Ventricle	heart
24	chr10:18484200-18484600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:18484200-18484800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:18484200-18484800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:18484200-18484800	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr10:18484200-18485000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr10:18484400-18484600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:18484400-18484600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:18484400-18484600	Enhancers	Colon Smooth Muscle	Colon
32	chr10:18484400-18484600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr10:18484400-18484800	Enhancers	Brain Substantia Nigra	brain
34	chr10:18484400-18484800	Enhancers	Fetal Brain Male	brain
35	chr10:18484400-18484800	Enhancers	Fetal Muscle Leg	muscle
36	chr10:18484400-18484800	Enhancers	Left Ventricle	heart
37	chr10:18484400-18484800	Enhancers	Right Atrium	heart

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