Variant report

Variant	rs11013039
Chromosome Location	chr10:18504074-18504075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18392878..18393854-chr10:18503287..18504544,6	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11013030	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11013034	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12098280	0.94[ASN][1000 genomes]
rs1475613	0.94[ASN][1000 genomes]
rs16916953	0.84[ASN][1000 genomes]
rs16916963	0.97[ASN][1000 genomes]
rs16916965	0.97[ASN][1000 genomes]
rs16916984	0.94[ASN][1000 genomes]
rs16916985	0.94[ASN][1000 genomes]
rs16916992	1.00[ASN][1000 genomes]
rs16917001	0.91[AMR][1000 genomes]
rs16917005	0.91[AMR][1000 genomes]
rs56405917	0.91[AMR][1000 genomes]
rs57461028	0.94[ASN][1000 genomes]
rs59304020	0.81[ASN][1000 genomes]
rs73595503	0.91[ASN][1000 genomes]
rs73595504	0.81[ASN][1000 genomes]
rs73595510	0.94[ASN][1000 genomes]
rs73595543	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7914927	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3469840	chr10:18501971-18504819	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3346215	chr10:18502321-18504569	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv17952	chr10:18503647-18504164	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18499200-18511000	Weak transcription	Aorta	Aorta
2	chr10:18500000-18504800	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:18500200-18506000	Weak transcription	Right Atrium	heart
4	chr10:18502000-18504400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:18502400-18513600	Weak transcription	Right Ventricle	heart
6	chr10:18502800-18505400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:18503400-18504800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:18503400-18505800	Enhancers	Fetal Heart	heart
9	chr10:18503600-18504400	Enhancers	Brain Angular Gyrus	brain
10	chr10:18503600-18504400	Enhancers	Brain Anterior Caudate	brain
11	chr10:18503600-18504400	Enhancers	Brain Hippocampus Middle	brain
12	chr10:18503600-18504400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:18503600-18504400	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr10:18503600-18504400	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr10:18503600-18504600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:18503600-18505000	Enhancers	Ovary	ovary
17	chr10:18503600-18505400	Enhancers	Fetal Stomach	stomach
18	chr10:18503800-18504200	Weak transcription	Left Ventricle	heart
19	chr10:18503800-18504200	Weak transcription	Pancreas	Pancrea
20	chr10:18503800-18504400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:18503800-18504400	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr10:18503800-18504400	Enhancers	Fetal Brain Male	brain
23	chr10:18503800-18504800	Enhancers	Fetal Lung	lung
24	chr10:18504000-18505400	Enhancers	Colon Smooth Muscle	Colon

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