Variant report

Variant	rs1475613
Chromosome Location	chr10:18492187-18492188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10828327	0.82[CHB][hapmap]
rs11013005	0.81[LWK][hapmap]
rs11013030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11013034	0.86[ASN][1000 genomes]
rs11013039	0.94[ASN][1000 genomes]
rs12098280	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16916950	0.88[YRI][hapmap]
rs16916953	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16916963	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16916965	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16916984	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16916985	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16916992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs57461028	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59304020	0.86[ASN][1000 genomes]
rs73595503	0.97[ASN][1000 genomes]
rs73595504	0.86[ASN][1000 genomes]
rs73595510	1.00[ASN][1000 genomes]
rs73595543	0.94[ASN][1000 genomes]
rs7914927	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:18486600-18492200	Weak transcription	Fetal Intestine Large	intestine
3	chr10:18486800-18502000	Weak transcription	Fetal Stomach	stomach
4	chr10:18490600-18494200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:18491000-18493200	Enhancers	Fetal Heart	heart
6	chr10:18491000-18494800	Enhancers	Rectal Smooth Muscle	rectum
7	chr10:18491200-18492600	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:18491200-18493000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:18491200-18493800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr10:18491200-18494400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:18491600-18492200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:18491600-18492200	Enhancers	Fetal Brain Female	brain
13	chr10:18491600-18492200	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr10:18491600-18492800	Flanking Active TSS	Fetal Brain Male	brain
15	chr10:18491600-18493200	Enhancers	Brain Anterior Caudate	brain
16	chr10:18491600-18494200	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr10:18491800-18492200	Flanking Active TSS	Colon Smooth Muscle	Colon
18	chr10:18491800-18492400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:18492000-18492200	Flanking Active TSS	Aorta	Aorta
20	chr10:18492000-18492200	Enhancers	NHLF	lung
21	chr10:18492000-18492400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:18492000-18492400	Enhancers	Brain Angular Gyrus	brain
23	chr10:18492000-18492400	Enhancers	Fetal Thymus	thymus
24	chr10:18492000-18492400	Enhancers	Left Ventricle	heart
25	chr10:18492000-18493200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr10:18492000-18493200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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