Variant report

Variant	rs73595503
Chromosome Location	chr10:18484745-18484746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11013030	0.91[ASN][1000 genomes]
rs11013034	0.84[ASN][1000 genomes]
rs11013039	0.91[ASN][1000 genomes]
rs12098280	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1475613	0.97[ASN][1000 genomes]
rs16916953	0.87[ASN][1000 genomes]
rs16916963	0.94[ASN][1000 genomes]
rs16916965	0.94[ASN][1000 genomes]
rs16916984	0.97[ASN][1000 genomes]
rs16916985	0.97[ASN][1000 genomes]
rs16916992	0.91[ASN][1000 genomes]
rs57461028	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58983166	0.83[AMR][1000 genomes]
rs59304020	0.89[ASN][1000 genomes]
rs73595504	0.89[ASN][1000 genomes]
rs73595510	0.97[ASN][1000 genomes]
rs73595543	0.91[ASN][1000 genomes]
rs7914927	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:18481800-18490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:18483000-18485400	Enhancers	Fetal Stomach	stomach
9	chr10:18483400-18484800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:18483400-18485000	Enhancers	NHLF	lung
11	chr10:18483600-18484800	Enhancers	Fetal Lung	lung
12	chr10:18483600-18484800	Enhancers	Osteobl	bone
13	chr10:18483600-18487800	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:18483800-18484800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:18483800-18485000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:18484000-18484800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:18484000-18484800	Enhancers	Ovary	ovary
18	chr10:18484000-18484800	Enhancers	NH-A	brain
19	chr10:18484000-18484800	Enhancers	NHDF-Ad	bronchial
20	chr10:18484000-18485000	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr10:18484000-18486600	Enhancers	Fetal Heart	heart
22	chr10:18484200-18484800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:18484200-18484800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:18484200-18484800	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr10:18484200-18485000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:18484400-18484800	Enhancers	Brain Substantia Nigra	brain
27	chr10:18484400-18484800	Enhancers	Fetal Brain Male	brain
28	chr10:18484400-18484800	Enhancers	Fetal Muscle Leg	muscle
29	chr10:18484400-18484800	Enhancers	Left Ventricle	heart
30	chr10:18484400-18484800	Enhancers	Right Atrium	heart
31	chr10:18484600-18484800	Flanking Active TSS	Colon Smooth Muscle	Colon
32	chr10:18484600-18485400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:18484600-18486000	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links