Variant report

Variant	rs11065179
Chromosome Location	chr12:121067677-121067678
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1055059	1.00[ASN][1000 genomes]
rs10849777	1.00[ASN][1000 genomes]
rs10849797	1.00[ASN][1000 genomes]
rs11065201	1.00[ASN][1000 genomes]
rs11065207	1.00[ASN][1000 genomes]
rs11065210	1.00[ASN][1000 genomes]
rs11065213	1.00[ASN][1000 genomes]
rs11065226	1.00[ASN][1000 genomes]
rs11065227	1.00[ASN][1000 genomes]
rs11065228	1.00[ASN][1000 genomes]
rs11065253	1.00[ASN][1000 genomes]
rs11065254	1.00[ASN][1000 genomes]
rs11065258	1.00[ASN][1000 genomes]
rs11065260	1.00[ASN][1000 genomes]
rs11065267	1.00[ASN][1000 genomes]
rs11065275	1.00[ASN][1000 genomes]
rs11065279	1.00[ASN][1000 genomes]
rs11065285	1.00[ASN][1000 genomes]
rs12366451	1.00[ASN][1000 genomes]
rs12368617	1.00[ASN][1000 genomes]
rs1718207	1.00[ASN][1000 genomes]
rs497457	1.00[ASN][1000 genomes]
rs498255	1.00[ASN][1000 genomes]
rs515784	1.00[ASN][1000 genomes]
rs519785	1.00[ASN][1000 genomes]
rs530162	1.00[ASN][1000 genomes]
rs554197	1.00[ASN][1000 genomes]
rs572009	1.00[ASN][1000 genomes]
rs581515	1.00[ASN][1000 genomes]
rs582678	1.00[ASN][1000 genomes]
rs590556	1.00[ASN][1000 genomes]
rs591489	1.00[ASN][1000 genomes]
rs59818945	1.00[ASN][1000 genomes]
rs61108232	1.00[ASN][1000 genomes]
rs61414515	1.00[ASN][1000 genomes]
rs61624288	1.00[ASN][1000 genomes]
rs627211	1.00[ASN][1000 genomes]
rs639343	1.00[ASN][1000 genomes]
rs645786	1.00[ASN][1000 genomes]
rs651156	1.00[ASN][1000 genomes]
rs660878	1.00[ASN][1000 genomes]
rs671815	1.00[ASN][1000 genomes]
rs708784	1.00[ASN][1000 genomes]
rs708788	1.00[ASN][1000 genomes]
rs73409953	1.00[ASN][1000 genomes]
rs73411916	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121064000-121069000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:121066000-121069400	Enhancers	Fetal Brain Male	brain
3	chr12:121066800-121067800	Weak transcription	Fetal Brain Female	brain
4	chr12:121066800-121068400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:121067600-121068000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:121067600-121069200	Enhancers	Brain Angular Gyrus	brain
7	chr12:121067600-121069200	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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