Variant report

Variant	rs11065213
Chromosome Location	chr12:121126380-121126381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121095512..121100910-chr12:121122531..121126551,5	MCF-7	breast:
2	chr12:121008513..121011933-chr12:121126000..121127892,3	MCF-7	breast:
3	chr12:121122674..121127779-chr12:121131254..121137297,11	MCF-7	breast:
4	chr12:121125134..121127601-chr20:52821438..52823168,2	MCF-7	breast:
5	chr12:121126318..121128176-chr12:121135786..121137880,3	MCF-7	breast:
6	chr12:121125276..121128582-chr12:121139011..121141679,3	MCF-7	breast:
7	chr12:120728399..120731246-chr12:121124112..121127371,3	MCF-7	breast:
8	chr12:121083460..121086406-chr12:121125581..121127490,2	K562	blood:
9	chr12:121125051..121127006-chr12:121446339..121449228,2	MCF-7	breast:
10	chr12:121077855..121079516-chr12:121124357..121126482,2	MCF-7	breast:
11	chr12:121017632..121023235-chr12:121123750..121127979,5	K562	blood:
12	chr12:121020078..121022631-chr12:121125640..121127142,2	K562	blood:
13	chr12:121122969..121126872-chr12:121145365..121151601,10	K562	blood:
14	chr12:121115639..121118008-chr12:121125789..121128419,2	K562	blood:
15	chr12:121085923..121088804-chr12:121121977..121126483,5	MCF-7	breast:
16	chr10:99093772..99095545-chr12:121124812..121127214,2	MCF-7	breast:
17	chr12:121124509..121126833-chr12:121162138..121164295,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPPL3.1-4	chr12:121124950-121126702	NONHSAT031190

No data

Variant related genes	Relation type
ENSG00000167272	Chromatin interaction
ENSG00000181274	Chromatin interaction
ENSG00000256364	Chromatin interaction
ENSG00000157895	Chromatin interaction
ENSG00000110917	Chromatin interaction
ENSG00000256008	Chromatin interaction
ENSG00000122971	Chromatin interaction
ENSG00000157782	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000175970	Chromatin interaction
ENSG00000225850	Chromatin interaction
ENSG00000202538	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1055059	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849777	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849797	1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065179	1.00[ASN][1000 genomes]
rs11065201	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065207	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065208	1.00[CEU][hapmap]
rs11065210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065222	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11065226	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065253	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065254	1.00[ASN][1000 genomes]
rs11065258	1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065260	1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065267	1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065275	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065279	1.00[GIH][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs11065281	0.83[AMR][1000 genomes]
rs11065285	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065288	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065291	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065294	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065308	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065309	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065315	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1151865	1.00[ASN][1000 genomes]
rs12366451	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12368617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1718207	1.00[ASN][1000 genomes]
rs497457	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs498255	1.00[ASN][1000 genomes]
rs513940	1.00[ASN][1000 genomes]
rs515784	1.00[ASN][1000 genomes]
rs519785	1.00[ASN][1000 genomes]
rs530162	1.00[ASN][1000 genomes]
rs554197	1.00[ASN][1000 genomes]
rs572009	1.00[ASN][1000 genomes]
rs574993	1.00[GIH][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs581197	1.00[ASN][1000 genomes]
rs581515	1.00[ASN][1000 genomes]
rs582678	1.00[ASN][1000 genomes]
rs590556	1.00[ASN][1000 genomes]
rs591489	1.00[ASN][1000 genomes]
rs59818945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61108232	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61414515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624288	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs627211	1.00[ASN][1000 genomes]
rs639343	1.00[ASN][1000 genomes]
rs645661	1.00[GIH][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs645786	1.00[ASN][1000 genomes]
rs647336	0.82[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs648262	1.00[GIH][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs651156	1.00[ASN][1000 genomes]
rs660878	1.00[ASN][1000 genomes]
rs671815	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs708784	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs708788	1.00[GIH][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs73409953	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411916	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73413866	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73413874	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs949443	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv899557	chr12:121069201-121189116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1045923	chr12:121082203-121146219	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv3498619	chr12:121124863-121129114	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv3498630	chr12:121124863-121129114	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121123600-121126400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr12:121123600-121126600	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr12:121123600-121126600	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr12:121123600-121126600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:121123600-121127000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:121123600-121127000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:121123800-121126400	Active TSS	NHLF	lung
8	chr12:121123800-121126600	Active TSS	Aorta	Aorta
9	chr12:121123800-121126600	Active TSS	Left Ventricle	heart
10	chr12:121123800-121126600	Active TSS	Ovary	ovary
11	chr12:121123800-121126600	Active TSS	Psoas Muscle	Psoas
12	chr12:121123800-121126600	Active TSS	Sigmoid Colon	Sigmoid Colon
13	chr12:121123800-121126600	Active TSS	Small Intestine	intestine
14	chr12:121123800-121126800	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr12:121123800-121126800	Active TSS	H1 Cell Line	embryonic stem cell
16	chr12:121123800-121126800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr12:121123800-121127000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr12:121123800-121127000	Active TSS	H9 Cell Line	embryonic stem cell
19	chr12:121123800-121127000	Active TSS	Pancreas	Pancrea
20	chr12:121123800-121127000	Active TSS	HSMM	muscle
21	chr12:121123800-121127200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr12:121123800-121127200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr12:121123800-121127200	Active TSS	Fetal Muscle Trunk	muscle
24	chr12:121123800-121127600	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr12:121124000-121126600	Active TSS	Gastric	stomach
26	chr12:121124000-121126600	Active TSS	Lung	lung
27	chr12:121124000-121126800	Active TSS	Esophagus	oesophagus
28	chr12:121124000-121126800	Active TSS	Fetal Intestine Large	intestine
29	chr12:121124000-121127000	Active TSS	Fetal Intestine Small	intestine
30	chr12:121124000-121127200	Active TSS	GM12878-XiMat	blood
31	chr12:121124200-121126400	Active TSS	Fetal Lung	lung
32	chr12:121124200-121127000	Active TSS	Colonic Mucosa	Colon
33	chr12:121124600-121126600	Bivalent/Poised TSS	HepG2	liver
34	chr12:121125000-121126800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr12:121125000-121127000	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr12:121125000-121127600	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr12:121125200-121127000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr12:121125200-121127800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr12:121125400-121126600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr12:121125400-121126600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr12:121125400-121126800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr12:121125400-121126800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr12:121125400-121126800	Active TSS	Right Atrium	heart
44	chr12:121125400-121127000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr12:121125400-121127000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
46	chr12:121125400-121127200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr12:121125400-121127600	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr12:121125400-121127600	Flanking Active TSS	Liver	Liver
49	chr12:121125400-121127600	Flanking Active TSS	Fetal Thymus	thymus
50	chr12:121125400-121127600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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