Variant report

Variant	rs61108232
Chromosome Location	chr12:121150006-121150007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121146305..121152610-chr12:121160959..121168394,8	MCF-7	breast:
2	chr12:121148056..121150871-chr12:121436598..121439075,2	MCF-7	breast:
3	chr12:121021974..121024111-chr12:121148529..121150037,2	MCF-7	breast:
4	chr12:121145921..121147941-chr12:121149529..121151514,2	MCF-7	breast:
5	chr12:121148398..121150885-chr12:121151004..121154800,4	MCF-7	breast:
6	chr12:121148319..121151196-chr12:121161623..121163655,2	K562	blood:
7	chr12:121122969..121126872-chr12:121145365..121151601,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110917	Chromatin interaction
ENSG00000122971	Chromatin interaction
ENSG00000256569	Chromatin interaction
ENSG00000271769	Chromatin interaction
ENSG00000265455	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1055059	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849797	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065179	1.00[ASN][1000 genomes]
rs11065201	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065207	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065210	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065213	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065222	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11065226	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065227	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065228	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065253	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065254	1.00[ASN][1000 genomes]
rs11065258	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065260	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065267	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065275	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065279	1.00[ASN][1000 genomes]
rs11065281	0.83[AMR][1000 genomes]
rs11065285	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065288	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065291	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065294	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065308	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065309	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065315	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11065318	1.00[ASN][1000 genomes]
rs1151854	1.00[ASN][1000 genomes]
rs1151855	1.00[ASN][1000 genomes]
rs1151860	1.00[ASN][1000 genomes]
rs1151865	1.00[ASN][1000 genomes]
rs12366451	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12368617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1718207	1.00[ASN][1000 genomes]
rs1732399	1.00[ASN][1000 genomes]
rs497457	1.00[ASN][1000 genomes]
rs498255	1.00[ASN][1000 genomes]
rs513940	1.00[ASN][1000 genomes]
rs515784	1.00[ASN][1000 genomes]
rs519785	1.00[ASN][1000 genomes]
rs530162	1.00[ASN][1000 genomes]
rs554197	1.00[ASN][1000 genomes]
rs572009	1.00[ASN][1000 genomes]
rs574993	1.00[ASN][1000 genomes]
rs581197	1.00[ASN][1000 genomes]
rs581515	1.00[ASN][1000 genomes]
rs582678	1.00[ASN][1000 genomes]
rs590556	1.00[ASN][1000 genomes]
rs591489	1.00[ASN][1000 genomes]
rs59818945	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61414515	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61624288	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs627211	1.00[ASN][1000 genomes]
rs639343	1.00[ASN][1000 genomes]
rs645661	1.00[ASN][1000 genomes]
rs645786	1.00[ASN][1000 genomes]
rs647336	1.00[ASN][1000 genomes]
rs648262	1.00[ASN][1000 genomes]
rs651156	1.00[ASN][1000 genomes]
rs660878	1.00[ASN][1000 genomes]
rs671815	1.00[ASN][1000 genomes]
rs708784	1.00[ASN][1000 genomes]
rs708788	1.00[ASN][1000 genomes]
rs73409953	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411916	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73413866	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73413874	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv899557	chr12:121069201-121189116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121148800-121150200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr12:121149000-121150200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr12:121149000-121150200	Flanking Active TSS	Dnd41	blood
4	chr12:121149000-121153600	Weak transcription	Aorta	Aorta
5	chr12:121149200-121150200	Flanking Active TSS	GM12878-XiMat	blood
6	chr12:121149400-121150200	Enhancers	Fetal Brain Male	brain
7	chr12:121149400-121150400	Enhancers	Primary T cells from cord blood	blood
8	chr12:121149400-121150400	Enhancers	Liver	Liver
9	chr12:121149400-121150600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr12:121149400-121150800	Enhancers	Fetal Heart	heart
11	chr12:121149600-121150200	Enhancers	Brain Anterior Caudate	brain
12	chr12:121149600-121150200	Enhancers	Brain Substantia Nigra	brain
13	chr12:121149600-121150200	Enhancers	Fetal Intestine Small	intestine
14	chr12:121149600-121150200	Enhancers	HUVEC	blood vessel
15	chr12:121149600-121150200	Enhancers	NH-A	brain
16	chr12:121149600-121150400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr12:121149600-121150400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr12:121149600-121150400	Enhancers	Fetal Intestine Large	intestine
19	chr12:121149600-121150400	Genic enhancers	Fetal Stomach	stomach
20	chr12:121149600-121150600	Enhancers	Adipose Nuclei	Adipose
21	chr12:121149600-121150600	Enhancers	Duodenum Mucosa	Duodenum
22	chr12:121149600-121150800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr12:121149600-121150800	Enhancers	Fetal Kidney	kidney
24	chr12:121149600-121151000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:121149600-121151200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr12:121149600-121151200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr12:121149600-121151200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr12:121149600-121151200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr12:121149600-121151200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr12:121149600-121151200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr12:121149600-121151200	Weak transcription	Gastric	stomach
32	chr12:121149600-121151200	Weak transcription	Lung	lung
33	chr12:121149600-121151200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr12:121149600-121151400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr12:121149600-121151600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr12:121149600-121152000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr12:121149600-121152200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr12:121149600-121152400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr12:121149600-121152400	Weak transcription	HSMMtube	muscle
40	chr12:121149600-121154200	Weak transcription	Colonic Mucosa	Colon
41	chr12:121149600-121157200	Weak transcription	Psoas Muscle	Psoas
42	chr12:121149600-121159000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr12:121149800-121150200	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr12:121149800-121150200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr12:121149800-121150200	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr12:121149800-121150200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr12:121149800-121150200	Enhancers	A549	lung
48	chr12:121149800-121150200	Enhancers	NHLF	lung
49	chr12:121149800-121150200	Genic enhancers	Osteobl	bone
50	chr12:121149800-121150400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links