The 2.0 version of rSNPBase

Variant report

Variant rs591489
Chromosome Location chr12:121234381-121234382
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:121206200-121238600 Weak transcription Small Intestine intestine
2 chr12:121209400-121236800 Weak transcription Placenta Amnion Placenta Amnion
3 chr12:121211400-121260800 Weak transcription Gastric stomach
4 chr12:121212600-121236600 Weak transcription Fetal Heart heart
5 chr12:121221000-121250000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr12:121221200-121249400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr12:121221400-121235800 Weak transcription Hela-S3 cervix
8 chr12:121221400-121240800 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr12:121221600-121238800 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr12:121222200-121237200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr12:121222200-121274000 Weak transcription Lung lung
12 chr12:121222400-121238800 Weak transcription Placenta Placenta
13 chr12:121222400-121240400 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr12:121222600-121237200 Weak transcription H1 Cell Line embryonic stem cell
15 chr12:121222600-121249200 Weak transcription Rectal Smooth Muscle rectum
16 chr12:121222600-121259000 Weak transcription Ovary ovary
17 chr12:121222600-121260800 Weak transcription Spleen Spleen
18 chr12:121222600-121268600 Weak transcription Esophagus oesophagus
19 chr12:121222600-121268600 Weak transcription Stomach Smooth Muscle stomach
20 chr12:121222800-121237200 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr12:121222800-121237400 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr12:121222800-121240600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr12:121222800-121245600 Weak transcription Primary neutrophils fromperipheralblood blood
24 chr12:121222800-121249400 Weak transcription HSMM muscle
25 chr12:121226200-121237200 Weak transcription Psoas Muscle Psoas
26 chr12:121228600-121235600 Weak transcription Thymus Thymus
27 chr12:121228600-121239400 Weak transcription Liver Liver
28 chr12:121229000-121245200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr12:121230000-121239000 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr12:121230000-121255200 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr12:121230600-121236000 Weak transcription Brain Cingulate Gyrus brain
32 chr12:121231200-121234800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr12:121231200-121238000 Weak transcription Left Ventricle heart
34 chr12:121231600-121237400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr12:121232400-121234800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr12:121232600-121234600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
37 chr12:121232600-121234600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr12:121232600-121234600 ZNF genes & repeats Fetal Lung lung
39 chr12:121232600-121234800 ZNF genes & repeats GM12878-XiMat blood
40 chr12:121232800-121234600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr12:121232800-121234600 ZNF genes & repeats A549 lung
42 chr12:121232800-121234800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr12:121232800-121234800 ZNF genes & repeats Primary B cells from cord blood blood
44 chr12:121232800-121234800 ZNF genes & repeats Dnd41 blood
45 chr12:121233000-121234400 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
46 chr12:121233000-121234600 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr12:121233000-121236200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
48 chr12:121233200-121234600 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
49 chr12:121233400-121234800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
50 chr12:121233600-121234800 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015