Variant report

Variant	rs11118661
Chromosome Location	chr1:221341042-221341043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11118693	1.00[EUR][1000 genomes]
rs11118695	1.00[EUR][1000 genomes]
rs11118697	1.00[EUR][1000 genomes]
rs11804822	1.00[EUR][1000 genomes]
rs11811531	1.00[EUR][1000 genomes]
rs12057905	1.00[EUR][1000 genomes]
rs12058952	1.00[EUR][1000 genomes]
rs12070831	1.00[EUR][1000 genomes]
rs12072517	1.00[EUR][1000 genomes]
rs12073583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077976	1.00[EUR][1000 genomes]
rs12085527	1.00[EUR][1000 genomes]
rs12086603	1.00[EUR][1000 genomes]
rs12086869	1.00[EUR][1000 genomes]
rs12087664	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12097387	1.00[EUR][1000 genomes]
rs17009637	1.00[AMR][1000 genomes]
rs58220035	1.00[EUR][1000 genomes]
rs58582639	1.00[EUR][1000 genomes]
rs60865356	1.00[EUR][1000 genomes]
rs61501165	1.00[EUR][1000 genomes]
rs6663534	1.00[EUR][1000 genomes]
rs6667275	1.00[EUR][1000 genomes]
rs73094956	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73101522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73101523	1.00[AMR][1000 genomes]
rs74143437	1.00[EUR][1000 genomes]
rs74144384	1.00[EUR][1000 genomes]
rs74144425	1.00[EUR][1000 genomes]
rs7522887	1.00[EUR][1000 genomes]
rs7536615	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221329400-221342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:221336000-221342600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:221336600-221341600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:221336600-221342600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:221336600-221343000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:221336800-221342600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:221337000-221342400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:221337400-221342600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:221338600-221342000	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:221338600-221342200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:221338800-221341200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:221338800-221341800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr1:221339200-221341600	Enhancers	GM12878-XiMat	blood
14	chr1:221339600-221341400	Enhancers	Adipose Nuclei	Adipose
15	chr1:221339600-221342600	Enhancers	Primary B cells from peripheral blood	blood
16	chr1:221339800-221341200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:221339800-221342000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:221339800-221342400	Weak transcription	HUVEC	blood vessel
19	chr1:221340400-221341200	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr1:221340600-221341200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr1:221340600-221342600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:221340800-221344000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr1:221341000-221341200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr1:221341000-221342000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:221341000-221342000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:221341000-221342600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr1:221341000-221343000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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