Variant report

Variant	rs11120491
Chromosome Location	chr1:215274049-215274050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10158967	0.86[YRI][hapmap]
rs10465699	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10494990	1.00[CEU][hapmap]
rs11120493	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120505	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12047560	1.00[CEU][hapmap]
rs12060322	0.93[YRI][hapmap]
rs12064019	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12069967	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12086417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12097685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12131195	1.00[CEU][hapmap]
rs12239750	0.96[AFR][1000 genomes]
rs1339403	0.87[YRI][hapmap]
rs1349672	1.00[CEU][hapmap]
rs1452634	1.00[CEU][hapmap]
rs17024306	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024342	0.86[YRI][hapmap]
rs55777551	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55804708	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59564038	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60799931	1.00[EUR][1000 genomes]
rs6656675	1.00[CEU][hapmap]
rs6695704	1.00[CEU][hapmap]
rs74140931	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74140935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74140936	1.00[EUR][1000 genomes]
rs74140938	1.00[EUR][1000 genomes]
rs74143657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215258200-215277600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:215258400-215277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:215265400-215280800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:215266600-215276000	Weak transcription	NHDF-Ad	bronchial
5	chr1:215269600-215277600	Weak transcription	Fetal Brain Male	brain
6	chr1:215269800-215276200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:215270600-215277200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:215273200-215275200	Strong transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links