Variant report

Variant	rs6695704
Chromosome Location	chr1:215242362-215242363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10465699	1.00[CEU][hapmap]
rs10494990	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs11120491	1.00[CEU][hapmap]
rs12023861	1.00[EUR][1000 genomes]
rs12031084	1.00[EUR][1000 genomes]
rs12047560	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12064019	1.00[CEU][hapmap]
rs12131195	1.00[CEU][hapmap]
rs1349672	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1452634	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17024077	1.00[EUR][1000 genomes]
rs17024306	1.00[CEU][hapmap]
rs2841623	1.00[EUR][1000 genomes]
rs57400751	1.00[EUR][1000 genomes]
rs575747	1.00[EUR][1000 genomes]
rs6656675	1.00[CEU][hapmap]
rs6657460	1.00[EUR][1000 genomes]
rs6688556	1.00[EUR][1000 genomes]
rs74140901	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215229400-215253000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215231600-215247600	Weak transcription	NHDF-Ad	bronchial
3	chr1:215242200-215242400	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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