Variant report

Variant	rs11120541
Chromosome Location	chr1:215457148-215457149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10864165	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10864166	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10864169	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11120519	0.87[CEU][hapmap]
rs11120524	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11120530	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11120533	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11120539	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11120542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120581	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs11583745	0.92[CEU][hapmap];0.80[YRI][hapmap];0.87[EUR][1000 genomes]
rs11588455	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12026669	0.89[EUR][1000 genomes]
rs12026702	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12037855	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12038616	0.84[CEU][hapmap]
rs12038695	0.83[CEU][hapmap]
rs12044688	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12047082	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12049601	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12407482	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12739619	0.86[EUR][1000 genomes]
rs12740245	0.88[CEU][hapmap]
rs12750276	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12752882	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12753507	0.87[CEU][hapmap]
rs1339401	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416653	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416654	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416655	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416661	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1538544	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1538547	0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs17024500	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2153244	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3933352	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4098470	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4098471	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4233309	0.87[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4655397	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4655398	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4655399	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4655400	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5025775	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6540886	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6540887	0.96[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6670661	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6674743	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7522160	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7522552	0.84[CEU][hapmap]
rs7531046	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs946487	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs946488	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs946489	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs946490	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014878	chr1:215453286-215527616	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003660	chr1:215453286-215529747	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215451600-215458200	Weak transcription	Fetal Lung	lung
2	chr1:215451600-215458400	Weak transcription	NHDF-Ad	bronchial

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