Variant report

Variant	rs11140302
Chromosome Location	chr9:86549491-86549492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86534561..86538761-chr9:86547777..86551990,5	MCF-7	breast:
2	chr9:86548981..86555040-chr9:86588754..86596573,13	MCF-7	breast:
3	chr9:86548960..86550790-chr9:86568981..86570981,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165115	Chromatin interaction
ENSG00000178966	Chromatin interaction
ENSG00000165119	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11140308	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	esv3366490	chr9:86541369-86608868	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
8	nsv1043703	chr9:86545917-86603545	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86536600-86571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:86537000-86553600	Weak transcription	Fetal Intestine Small	intestine
3	chr9:86537000-86553600	Weak transcription	Thymus	Thymus
4	chr9:86543000-86571000	Weak transcription	Esophagus	oesophagus
5	chr9:86544000-86552400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:86545400-86550400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:86546400-86550400	Enhancers	Placenta	Placenta
8	chr9:86546800-86553400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr9:86546800-86553600	Weak transcription	Fetal Thymus	thymus
10	chr9:86547200-86553600	Weak transcription	Primary T cells from cord blood	blood
11	chr9:86547200-86553800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:86547200-86570200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:86547800-86554200	Weak transcription	Dnd41	blood
14	chr9:86548000-86550400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:86548000-86567000	Weak transcription	GM12878-XiMat	blood
16	chr9:86548400-86550200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:86548600-86549600	Enhancers	Liver	Liver
18	chr9:86548600-86549600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr9:86548600-86550200	Enhancers	Adipose Nuclei	Adipose
20	chr9:86548600-86550200	Enhancers	HUVEC	blood vessel
21	chr9:86548600-86550400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr9:86548600-86550400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:86548600-86550800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:86548600-86550800	Enhancers	NHLF	lung
25	chr9:86548600-86551000	Enhancers	HMEC	breast
26	chr9:86548600-86551000	Enhancers	NHEK	skin
27	chr9:86548600-86551200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:86548600-86551800	Enhancers	NHDF-Ad	bronchial
29	chr9:86548600-86551800	Enhancers	Osteobl	bone
30	chr9:86548600-86552000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:86548600-86552600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:86548600-86552600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr9:86548600-86553000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:86548800-86550200	Enhancers	HepG2	liver
35	chr9:86548800-86550400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:86548800-86550600	Enhancers	Psoas Muscle	Psoas
37	chr9:86548800-86554400	Weak transcription	Small Intestine	intestine
38	chr9:86549000-86550200	Enhancers	Primary hematopoietic stem cells	blood
39	chr9:86549000-86550200	Enhancers	A549	lung
40	chr9:86549000-86550200	Flanking Active TSS	Hela-S3	cervix
41	chr9:86549000-86550200	Enhancers	HSMMtube	muscle
42	chr9:86549000-86550400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:86549000-86550800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:86549000-86553800	Weak transcription	Pancreas	Pancrea
45	chr9:86549000-86570200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr9:86549200-86550000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:86549200-86550000	Weak transcription	Lung	lung
48	chr9:86549200-86550200	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr9:86549200-86550800	Enhancers	HSMM	muscle
50	chr9:86549200-86551000	Enhancers	NH-A	brain

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