Variant report

Variant	rs11142650
Chromosome Location	chr9:71109125-71109126
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10116868	0.85[JPT][hapmap]
rs10465187	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs10511958	0.85[JPT][hapmap]
rs10780962	0.85[JPT][hapmap]
rs10780963	0.85[JPT][hapmap]
rs10780967	0.91[JPT][hapmap]
rs10780999	0.80[CEU][hapmap]
rs10868795	0.83[CHD][hapmap]
rs10868851	0.85[JPT][hapmap]
rs10868852	0.85[JPT][hapmap]
rs10868877	0.85[JPT][hapmap]
rs10868879	0.83[JPT][hapmap]
rs11142199	0.83[CHD][hapmap]
rs11142549	0.85[JPT][hapmap]
rs11791828	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12000789	0.85[JPT][hapmap]
rs12353500	0.81[JPT][hapmap]
rs1353009	0.85[JPT][hapmap]
rs1492824	0.83[CHD][hapmap]
rs17056009	0.81[JPT][hapmap]
rs265089	0.87[CEU][hapmap]
rs4237245	0.90[JPT][hapmap]
rs4744594	0.81[JPT][hapmap]
rs4745041	0.91[JPT][hapmap]
rs4745047	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6560144	0.85[JPT][hapmap]
rs7019089	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7020465	0.83[CHD][hapmap]
rs7022220	0.93[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7025140	0.83[CHD][hapmap]
rs7039149	0.91[JPT][hapmap]
rs7039686	0.85[JPT][hapmap]
rs7042123	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71092200-71115400	Weak transcription	Psoas Muscle	Psoas
2	chr9:71101800-71113600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:71102200-71121000	Weak transcription	Fetal Kidney	kidney
4	chr9:71102400-71110800	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:71102400-71111200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:71103600-71122000	Weak transcription	Ovary	ovary
7	chr9:71103800-71114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:71104400-71114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:71105200-71109200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:71106400-71109600	Enhancers	Rectal Smooth Muscle	rectum
11	chr9:71107000-71109400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr9:71107000-71110200	Genic enhancers	Stomach Smooth Muscle	stomach
13	chr9:71107200-71109400	Enhancers	Fetal Lung	lung
14	chr9:71107200-71110000	Enhancers	HSMMtube	muscle
15	chr9:71107400-71110000	Enhancers	Fetal Heart	heart
16	chr9:71107600-71109600	Enhancers	Fetal Stomach	stomach
17	chr9:71107600-71109800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr9:71108000-71109600	Weak transcription	Right Atrium	heart
19	chr9:71108000-71111000	Weak transcription	Left Ventricle	heart
20	chr9:71108400-71109600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:71108600-71109200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:71108600-71109400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:71108600-71109600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:71108600-71111400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:71108800-71109800	Enhancers	Aorta	Aorta
26	chr9:71109000-71109200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:71109000-71109200	Flanking Active TSS	Colon Smooth Muscle	Colon
28	chr9:71109000-71109600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:71109000-71109600	Enhancers	NHLF	lung
30	chr9:71109000-71110200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:71109000-71114000	Weak transcription	Right Ventricle	heart

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