Variant report

Variant	rs11154034
Chromosome Location	chr6:121825381-121825382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10457419	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1324096	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1570629	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1815297	0.80[ASN][1000 genomes]
rs1886250	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1951906	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1977286	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2031299	0.85[ASN][1000 genomes]
rs2093824	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6900780	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6920663	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6921648	0.86[ASN][1000 genomes]
rs6925183	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925191	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6926300	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933477	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6937659	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs7757404	0.84[ASN][1000 genomes]
rs7764196	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7773394	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9375035	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385198	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9387962	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9387969	0.85[ASN][1000 genomes]
rs9398637	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9401410	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121813200-121828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:121817200-121825400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:121820000-121828000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:121824200-121829400	Enhancers	Hela-S3	cervix
5	chr6:121824400-121825800	Enhancers	Fetal Lung	lung
6	chr6:121824400-121825800	Enhancers	NHLF	lung
7	chr6:121824400-121826000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:121824400-121826000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:121824400-121826000	Enhancers	NH-A	brain
10	chr6:121824400-121826000	Enhancers	Osteobl	bone
11	chr6:121824400-121826200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:121824600-121825800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:121824600-121826800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:121824800-121825800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:121824800-121825800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:121824800-121826000	Enhancers	HUVEC	blood vessel
17	chr6:121824800-121826800	Enhancers	HMEC	breast
18	chr6:121825000-121825400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:121825000-121825400	Enhancers	HSMM	muscle
20	chr6:121825000-121825600	Enhancers	NHDF-Ad	bronchial
21	chr6:121825000-121825800	Enhancers	NHEK	skin
22	chr6:121825000-121826600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:121825000-121826800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:121825200-121825400	Active TSS	A549	lung
25	chr6:121825200-121825800	Enhancers	Colon Smooth Muscle	Colon
26	chr6:121825200-121826000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:121825200-121827000	Weak transcription	Aorta	Aorta

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