Variant report

Variant	rs2093824
Chromosome Location	chr6:121843294-121843295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10457419	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11154034	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1324096	0.83[ASN][1000 genomes]
rs1570629	0.82[ASN][1000 genomes]
rs1886250	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1951906	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977286	0.83[ASN][1000 genomes]
rs2031299	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900780	0.83[ASN][1000 genomes]
rs6920663	0.83[ASN][1000 genomes]
rs6925183	0.83[ASN][1000 genomes]
rs6925191	0.83[ASN][1000 genomes]
rs6926300	0.83[ASN][1000 genomes]
rs6933477	0.81[ASN][1000 genomes]
rs7757404	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7764196	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7773394	0.81[ASN][1000 genomes]
rs9375035	0.83[ASN][1000 genomes]
rs9385198	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9387962	0.83[ASN][1000 genomes]
rs9387969	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398637	0.83[ASN][1000 genomes]
rs9401410	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121838200-121844000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:121841000-121845400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:121841200-121845400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:121841600-121843600	Enhancers	NHDF-Ad	bronchial
5	chr6:121841600-121843800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:121841800-121843600	Enhancers	Osteobl	bone
7	chr6:121841800-121844200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:121842000-121843400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:121842000-121843400	Enhancers	NHLF	lung
10	chr6:121842000-121843800	Weak transcription	Aorta	Aorta
11	chr6:121842000-121844200	Enhancers	HMEC	breast
12	chr6:121842200-121843400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:121842200-121843400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:121842200-121843400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:121842200-121843400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:121842200-121843400	Flanking Active TSS	HUVEC	blood vessel
17	chr6:121842200-121844200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr6:121842200-121844200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:121842200-121844800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:121842200-121844800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:121842200-121847400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:121842400-121843400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:121842400-121843400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:121842400-121843400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:121842400-121843400	Flanking Active TSS	NH-A	brain
26	chr6:121842400-121843600	Weak transcription	Fetal Stomach	stomach
27	chr6:121842400-121843600	Enhancers	HSMMtube	muscle
28	chr6:121842400-121844800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:121842600-121843600	Enhancers	Colon Smooth Muscle	Colon
30	chr6:121842600-121844600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:121842600-121844800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:121842600-121845000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:121842800-121843600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:121842800-121843600	Enhancers	Ovary	ovary
35	chr6:121842800-121844000	Enhancers	Hela-S3	cervix
36	chr6:121842800-121844200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:121842800-121844200	Enhancers	NHEK	skin
38	chr6:121842800-121844800	Enhancers	HSMM	muscle
39	chr6:121842800-121845400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr6:121843000-121843600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:121843000-121843800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:121843000-121844400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr6:121843200-121843400	Enhancers	Stomach Smooth Muscle	stomach
44	chr6:121843200-121843400	Flanking Active TSS	A549	lung
45	chr6:121843200-121843600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:121843200-121843600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:121843200-121844000	Weak transcription	Lung	lung
48	chr6:121843200-121844800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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