Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10457419	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11154034	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1324096	0.83[ASN][1000 genomes]
rs1570629	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1886250	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1977286	0.83[ASN][1000 genomes]
rs2031299	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093824	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900780	0.83[ASN][1000 genomes]
rs6920663	0.83[ASN][1000 genomes]
rs6925183	0.83[ASN][1000 genomes]
rs6925191	0.83[ASN][1000 genomes]
rs6926300	0.83[ASN][1000 genomes]
rs6933477	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6937659	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs7757404	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7764196	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7773394	0.81[ASN][1000 genomes]
rs9375035	0.83[ASN][1000 genomes]
rs9385198	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9387962	0.83[ASN][1000 genomes]
rs9387969	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398637	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9401410	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121828600-121841200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:121830600-121843200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:121832000-121841400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:121832000-121842000	Weak transcription	HMEC	breast
5	chr6:121837600-121842200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:121837600-121843000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:121838200-121844000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:121839000-121843000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:121840000-121841400	Enhancers	HUVEC	blood vessel
10	chr6:121840400-121841600	Weak transcription	Aorta	Aorta
11	chr6:121840600-121841200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:121840600-121841200	Enhancers	A549	lung
13	chr6:121840600-121841200	Enhancers	NH-A	brain
14	chr6:121840800-121841200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:121841000-121841200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:121841000-121841400	Enhancers	Osteobl	bone
17	chr6:121841000-121842600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:121841000-121845400	Enhancers	HUES64 Cell Line	embryonic stem cell

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