Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10457419	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11154034	0.85[ASN][1000 genomes]
rs1324096	0.83[ASN][1000 genomes]
rs1570629	0.82[ASN][1000 genomes]
rs1886250	0.85[ASN][1000 genomes]
rs1951906	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977286	0.83[ASN][1000 genomes]
rs2093824	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900780	0.83[ASN][1000 genomes]
rs6920663	0.83[ASN][1000 genomes]
rs6925183	0.83[ASN][1000 genomes]
rs6925191	0.83[ASN][1000 genomes]
rs6926300	0.83[ASN][1000 genomes]
rs6933477	0.81[ASN][1000 genomes]
rs7757404	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7764196	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7773394	0.81[ASN][1000 genomes]
rs9375035	0.83[ASN][1000 genomes]
rs9385198	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9387962	0.83[ASN][1000 genomes]
rs9387969	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398637	0.83[ASN][1000 genomes]
rs9401410	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1847344	chr6:121845356-121875648	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844166	chr6:121845356-121880939	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121845400-121850800	Weak transcription	Osteobl	bone
2	chr6:121845400-121854200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:121847000-121848000	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:121847000-121851000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:121847200-121847800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:121847200-121847800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:121847200-121847800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:121847200-121847800	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr6:121847400-121847800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:121847400-121847800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr6:121847400-121847800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:121847400-121847800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:121847400-121847800	Enhancers	Ovary	ovary
14	chr6:121847400-121848200	Enhancers	Colon Smooth Muscle	Colon

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