Variant report

Variant	rs11165105
Chromosome Location	chr1:94741292-94741293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11165098	0.94[ASN][1000 genomes]
rs11165104	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165111	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11587699	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069420	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12084043	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12090310	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12090491	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12096115	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1330855	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687949	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111360	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1756254	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2150269	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2774923	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28613199	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493159	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3789688	0.92[ASN][1000 genomes]
rs3814019	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3827751	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs58466782	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59960594	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs722296	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525008	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528831	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7530160	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7538484	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7540684	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548951	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94725800-94742600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:94730800-94743600	Weak transcription	Lung	lung
3	chr1:94734200-94748600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:94736400-94742400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:94736800-94742400	Weak transcription	HSMMtube	muscle
6	chr1:94736800-94744800	Weak transcription	HUVEC	blood vessel
7	chr1:94737200-94742000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:94738400-94742800	Weak transcription	NHLF	lung
9	chr1:94738400-94744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:94738400-94750000	Weak transcription	Pancreas	Pancrea
11	chr1:94738400-94750000	Weak transcription	HMEC	breast
12	chr1:94738600-94744400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:94738600-94750200	Weak transcription	Fetal Kidney	kidney
14	chr1:94738800-94742400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:94738800-94750600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:94739000-94744800	Weak transcription	HSMM	muscle
17	chr1:94739200-94746200	Weak transcription	NH-A	brain
18	chr1:94739400-94742000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:94739600-94742400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:94740200-94741800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr1:94740200-94742000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr1:94740200-94746600	Enhancers	Fetal Muscle Leg	muscle
23	chr1:94740400-94741600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr1:94740600-94741600	Weak transcription	Ovary	ovary
25	chr1:94740600-94742400	Weak transcription	Osteobl	bone
26	chr1:94740600-94742800	Weak transcription	Adipose Nuclei	Adipose
27	chr1:94740800-94745800	Weak transcription	Right Atrium	heart
28	chr1:94741000-94741400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:94741200-94742400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr1:94741200-94742400	Weak transcription	NHDF-Ad	bronchial
31	chr1:94741200-94742600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:94741200-94744800	Weak transcription	Fetal Stomach	stomach
33	chr1:94741200-94746800	Weak transcription	Rectal Smooth Muscle	rectum

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