Variant report

Variant	rs35493159
Chromosome Location	chr1:94706632-94706633
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:114)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:114 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr1:94706049-94706853	SK-N-SH	brain:	n/a	n/a
2	RAD21	chr1:94706309-94706715	SK-N-SH_RA	brain:	n/a	n/a
3	CTCF	chr1:94706540-94706690	HBMEC	blood vessel:	n/a	n/a
4	CTCF	chr1:94706496-94706686	Gliobla	brain:	n/a	n/a
5	CTCF	chr1:94706436-94706711	Medullo	brain:	n/a	n/a
6	CTCF	chr1:94706431-94706743	K562	blood:	n/a	n/a
7	CTCF	chr1:94706520-94706670	HPF	lung:	n/a	n/a
8	CTCF	chr1:94706340-94706752	HepG2	liver:	n/a	n/a
9	CTCF	chr1:94706420-94706746	IMR90	lung:	n/a	n/a
10	CTCF	chr1:94706520-94706670	HMF	breast:	n/a	n/a
11	CTCF	chr1:94706520-94706670	SAEC	small airway:	n/a	n/a
12	RAD21	chr1:94706303-94706795	A549	lung:	n/a	n/a
13	ARID3A	chr1:94706502-94706733	HepG2	liver:	n/a	n/a
14	CTCF	chr1:94706500-94706650	A549	lung:	n/a	n/a
15	CTCF	chr1:94706500-94706650	SK-N-SH_RA	brain:	n/a	n/a
16	CTCF	chr1:94706514-94706681	LNCaP	prostate:	n/a	n/a
17	CTCF	chr1:94706554-94706654	GM19239	blood:	n/a	n/a
18	CTCF	chr1:94706540-94706690	K562	blood:	n/a	n/a
19	RAD21	chr1:94706263-94706711	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr1:94706540-94706690	GM12864	blood:	n/a	n/a
21	CTCF	chr1:94706520-94706670	AG09319	gingival:	n/a	n/a
22	RAD21	chr1:94706456-94706735	A549	lung:	n/a	n/a
23	CTCF	chr1:94706520-94706670	GM12871	blood:	n/a	n/a
24	RAD21	chr1:94706339-94706745	SK-N-SH_RA	brain:	n/a	n/a
25	CTCF	chr1:94706303-94706831	A549	lung:	n/a	n/a
26	CTCF	chr1:94706487-94706665	LNCaP	prostate:	n/a	n/a
27	CTCF	chr1:94706520-94706670	HUVEC	blood vessel:	n/a	n/a
28	CTCF	chr1:94706500-94706650	RPTEC	kidney:	n/a	n/a
29	CTCF	chr1:94706520-94706670	BE2_C	brain:	n/a	n/a
30	CTCF	chr1:94706483-94706703	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr1:94706525-94706632	ProgFib	skin:	n/a	n/a
32	CTCF	chr1:94706500-94706650	NHLF	lung:	n/a	n/a
33	RAD21	chr1:94706404-94706727	IMR90	lung:	n/a	n/a
34	CTCF	chr1:94706520-94706670	GM12864	blood:	n/a	n/a
35	CTCF	chr1:94706520-94706670	NHDF-neo	bronchial:	n/a	n/a
36	CTCF	chr1:94706520-94706670	GM12866	blood:	n/a	n/a
37	CTCF	chr1:94706520-94706670	HPAF	blood vessel:	n/a	n/a
38	SMC3	chr1:94706413-94706744	Hela-S3	cervix:	n/a	n/a
39	CTCF	chr1:94706317-94706756	A549	lung:	n/a	n/a
40	CTCF	chr1:94706540-94706690	HRPEpiC	eye:	n/a	n/a
41	RAD21	chr1:94706355-94706686	MCF-7	breast:	n/a	n/a
42	CTCF	chr1:94706520-94706670	HMEC	breast:	n/a	n/a
43	CTCF	chr1:94706473-94706702	HepG2	liver:	n/a	n/a
44	CTCF	chr1:94706520-94706670	GM12872	blood:	n/a	n/a
45	RAD21	chr1:94706439-94706652	GM12878	blood:	n/a	n/a
46	FOXA2	chr1:94706471-94706727	HepG2	liver:	n/a	n/a
47	CTCF	chr1:94706520-94706670	BJ	skin:	n/a	n/a
48	CTCF	chr1:94706351-94706762	MCF-7	breast:	n/a	n/a
49	CTCF	chr1:94706560-94706710	HUVEC	blood vessel:	n/a	n/a
50	CTCF	chr1:94706560-94706710	GM12869	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:94526964..94527790-chr1:94706098..94706920,3	MCF-7	breast:
2	chr1:94528993..94529506-chr1:94706216..94707195,2	MCF-7	breast:
3	chr1:94527064..94527740-chr1:94706101..94706691,3	MCF-7	breast:
4	chr1:94526658..94527630-chr1:94706469..94707390,3	K562	blood:

No data

Variant related genes	Relation type
ARHGAP29	TF binding region
ENSG00000198691	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11165098	0.95[ASN][1000 genomes]
rs11165104	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11165105	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11165111	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11587699	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12069420	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12084043	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12090310	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12090491	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12096115	0.85[ASN][1000 genomes]
rs1330855	0.96[ASN][1000 genomes]
rs1687949	0.99[ASN][1000 genomes]
rs17111360	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1756254	0.95[ASN][1000 genomes]
rs2150269	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2774923	0.96[ASN][1000 genomes]
rs28613199	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3789688	0.94[ASN][1000 genomes]
rs3814019	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3827751	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58466782	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs59960594	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722296	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7525008	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7528831	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7530160	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7538484	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7540684	0.99[ASN][1000 genomes]
rs7548951	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94703600-94709000	Enhancers	HUVEC	blood vessel
2	chr1:94703600-94712000	Weak transcription	HSMM	muscle
3	chr1:94704000-94709000	Weak transcription	Liver	Liver
4	chr1:94704800-94711400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:94705400-94709800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:94705800-94707400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:94705800-94707600	Weak transcription	NHEK	skin
8	chr1:94705800-94709800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:94705800-94709800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:94706000-94707600	Weak transcription	NHDF-Ad	bronchial
11	chr1:94706000-94709800	Weak transcription	Osteobl	bone
12	chr1:94706200-94706800	Enhancers	HepG2	liver
13	chr1:94706400-94707600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:94706400-94710000	Weak transcription	A549	lung
15	chr1:94706600-94707400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:94706600-94710400	Weak transcription	NH-A	brain

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