Variant report

Variant	rs2774923
Chromosome Location	chr1:94752040-94752041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11165098	0.92[ASN][1000 genomes]
rs11165104	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11165105	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11165111	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11587699	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12069420	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12084043	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12090310	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12090491	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12096115	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1330855	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1687949	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17111360	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1756254	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2150269	0.96[ASN][1000 genomes]
rs28613199	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35493159	0.96[ASN][1000 genomes]
rs3789688	0.90[ASN][1000 genomes]
rs3814019	0.96[ASN][1000 genomes]
rs3827751	0.94[ASN][1000 genomes]
rs58466782	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59960594	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs722296	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7525008	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7528831	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7530160	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7538484	0.94[ASN][1000 genomes]
rs7540684	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7548951	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94749600-94752800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:94749800-94752800	Enhancers	HUVEC	blood vessel
3	chr1:94749800-94753000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:94750000-94752400	Enhancers	HSMM	muscle
5	chr1:94750000-94752600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:94750000-94752600	Enhancers	HMEC	breast
7	chr1:94750000-94752800	Enhancers	NHEK	skin
8	chr1:94750000-94753000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:94750000-94753000	Enhancers	NHLF	lung
10	chr1:94750200-94752800	Enhancers	Stomach Mucosa	stomach
11	chr1:94750400-94752600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:94750400-94752800	Enhancers	Duodenum Mucosa	Duodenum
13	chr1:94750600-94752200	Weak transcription	Fetal Heart	heart
14	chr1:94750600-94752600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:94750600-94752600	Enhancers	NHDF-Ad	bronchial
16	chr1:94750600-94753000	Enhancers	Small Intestine	intestine
17	chr1:94750800-94752400	Weak transcription	Fetal Intestine Small	intestine
18	chr1:94750800-94752400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr1:94750800-94753000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr1:94751000-94752400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:94751000-94752600	Weak transcription	Fetal Stomach	stomach
22	chr1:94751800-94752600	Weak transcription	Osteobl	bone

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