Variant report

Variant	rs59960594
Chromosome Location	chr1:94715097-94715098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11165098	0.95[ASN][1000 genomes]
rs11165104	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11165105	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11165111	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11587699	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12069420	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12084043	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12090310	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12090491	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12096115	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1330855	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1687949	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17111360	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1756254	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2150269	0.98[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2774923	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28613199	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35493159	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789688	0.94[ASN][1000 genomes]
rs3814019	0.95[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3827751	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs58466782	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs722296	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7525008	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7528831	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7530160	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7538484	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7540684	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7548951	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94713600-94715800	Weak transcription	Placenta	Placenta
2	chr1:94713600-94722800	Weak transcription	Gastric	stomach
3	chr1:94713800-94715600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:94713800-94716200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:94713800-94716400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:94714000-94715600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:94714000-94715600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:94714000-94715600	Weak transcription	Pancreas	Pancrea
9	chr1:94714000-94715600	Weak transcription	Stomach Mucosa	stomach
10	chr1:94714000-94716000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:94714000-94716000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:94714000-94716200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:94714000-94716800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:94714000-94719200	Weak transcription	HUVEC	blood vessel
15	chr1:94714000-94719800	Weak transcription	Adipose Nuclei	Adipose
16	chr1:94714000-94719800	Weak transcription	NHDF-Ad	bronchial
17	chr1:94714400-94715600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:94714400-94715600	Weak transcription	HepG2	liver
19	chr1:94714600-94724000	Weak transcription	A549	lung
20	chr1:94714800-94719000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:94714800-94719600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:94714800-94719800	Weak transcription	NH-A	brain
23	chr1:94714800-94721200	Weak transcription	HSMM	muscle
24	chr1:94715000-94715400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:94715000-94715400	Weak transcription	NHEK	skin
26	chr1:94715000-94716400	Enhancers	HMEC	breast
27	chr1:94715000-94719800	Weak transcription	Osteobl	bone

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